Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53890 1155 / 0 AtPSKR2 phytosylfokine-alpha receptor 2 (.1) AT2G02220 826 / 0 ATPSKR1 phytosulfokin receptor 1 (.1) AT1G72300 781 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT1G55610 464 / 3e-145 BRL1 BRI1 like (.1.2) AT5G07280 450 / 2e-139 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT3G13380 442 / 9e-137 BRL3 BRI1-like 3 (.1) AT2G01950 427 / 1e-131 VH1, BRL2 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) AT1G17240 409 / 4e-129 AtRLP2 receptor like protein 2 (.1) AT4G20140 414 / 1e-125 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G44700 404 / 6e-122 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005403 [exp] 1862 / 0 AT5G53890 1248 / 0.0 phytosylfokine-alpha receptor 2 (.1) Lus10016395 [exp] 770 / 0 AT1G72300 1170 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10019722 [exp] 770 / 0 AT1G72300 1189 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10033533 [exp] 453 / 8e-141 AT4G39400 1492 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10020835 [exp] 441 / 3e-136 AT4G39400 1486 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10005784 [exp] 421 / 5e-129 AT4G39400 1361 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10006817 [exp] 412 / 1e-125 AT4G39400 1356 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10038726 [exp] 410 / 3e-125 AT2G01950 1501 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Lus10039132 [exp] 403 / 1e-122 AT2G01950 1503 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G116900 [exp] 1355 / 0 AT5G53890 1279 / 0.0 phytosylfokine-alpha receptor 2 (.1) Potri.001G398500 [exp] 1348 / 0 AT5G53890 1268 / 0.0 phytosylfokine-alpha receptor 2 (.1) Potri.008G144700 [exp] 811 / 0 AT2G02220 1258 / 0.0 phytosulfokin receptor 1 (.1) Potri.010G097700 [exp] 802 / 0 AT2G02220 1187 / 0.0 phytosulfokin receptor 1 (.1) Potri.003G074000 [exp] 778 / 0 AT1G72300 1215 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G161000 [exp] 756 / 0 AT1G72300 1199 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.015G141200 [exp] 471 / 1e-146 AT5G07280 1347 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.012G139000 [exp] 468 / 1e-145 AT5G07280 1377 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G472900 [exp] 452 / 3e-140 AT1G55610 1485 / 0.0 BRI1 like (.1.2) Potri.007G078100 [exp] 442 / 9e-137 AT4G39400 1426 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10009213 pacid=23145595 polypeptide=Lus10009213 locus=Lus10009213.g ID=Lus10009213.BGIv1.0 annot-version=v1.0 ATGGTGAAGCTGGGGTTTCTGATTAGTTTACTCAAATGGCTAGTCTTGCTGTGCTTTCTTTCATCCTCTCTTGGTTATATTCATGCAATCAATGGCCAAT TGTACTGTAATCCCAATGACTTGAAGGCACTCAAGGAATTTGCAGGCAGCTTCAATAATGGGTCCCTGGTTGCTTCTTGGTCTGATGATACCAAGTGCTG CAACTGGGATGGAGTTTCTTGTGGAGATTACATCATCTCCAATGGCAGTAGAGTGACTAAGCTGATTCTACCAAAGCATGGCCTTCAAGGGACGATTCCT ACAGTTTTGGGCAGCTTGGATCAGCTCAAATCCCTCGATCTCTCCTTTAATCGTCTTGATGGCGAGCTGCCCGTGGAGCTCTCGGGGTTAAAGAAGCTGG AGTTTCTTGATTTAAGTTATAACCTGCTATCAGGAAATATTTCAGAGGTGCTCTCTGGTATGCTCTCAATTCGGTCGTTCAACATTTCCAGCAATCATTT CGACGATGATTTGTTTCAGCTTGTGGAACTTCCCAATCTTGTTGTATTCAACATAAGCAACAATTCTTTCACTGGCCCTGTGAGTCCCAGGATTTGCAGC ATATCTGGTGGGATTGCAATTGTTGATCTGTCAATGAACAATCTTGTTGGTTGTCTGGAGAAGTTGACAAATTGCAGCTCATCACTCCAGCAGCTGCATT TAGACGGCAATATGATCTCGGGTACTCTTCCTCCGACTTTGTATTCATTGCCGGCTTTGCAACAACTATCTATTTCCAGCAACAATTTCTCTGGACACTT AAGCGAAGAATTGAGTAAGCTCTCCAGCCTTACTACTTTTCTTGTTTATGGGAACAGGTTTTCGGGTCAGATTCCCGATGTTTTTGACAACCTTACTGAG TTAGAGCAATTTGATGCTCATTCCAATTCATTCTCTGGACCATTGCCTTCAACCCTGTCATTATGCACCAAGCTGCGTGTCCTTGACCTTAGAAATAATA CCATGTCTGGCCCAATTGATCTCAACTTTTCTTCAATGCCTCATCTTAATATACTTGATCTAGCCACCAATCGCTTCTTTGGCTCGCTTCCAGAGTCTCT CTCTGATTGCCATGAATTGAAGACTTTGAGCCTAGCTAAGAATGTCTTGAATGGCAGTATACCTGAGAGTTATGGCATGCTCTCATCGCTTTCATTTCTC TCCTTGTCAAACAACACGGTTGTGAACTTGCATAGTGCATTATCTGTGCTGCAACATTGTCAGAATCTCACCACTCTAATCCTCACAAAGAATTTTATTG GTGATGAGATACCTGTAAATGTGAGTGGATTTGAGAGTTTGGCTGTCTTTGCACTTGGAAATTGTGCTCTCAGAGGCCAAATCCCTCCATGGTTATTGAA TTGCAAGAAGTTACAGGTTCTCGACTTGTCATGGAATCGTCTTGATGGTGGTATTCCTACTTGGATTGGTCAGATGGAGAATTTATTTTACTTGGATATT TCAAATAACTCTCTTACTGGAGAAATACCAGAAAGCCTTATGGAGCTAAAGAGTCTCACTTCTGCCAGCCCAAGTGCACCTAGTCTCATTTCTTCAGCGG GGATTCCACTATACGTGAAGAGGAACCGGAGTGGAAGTGGCTTGCAGTACAAACAGGTATCAAGCTTCCCACCATCCATGTATTTGAGCTTCAACAAGAT AAATGGGACACTTTTGCCAAAGATCGGACAGTTAAAACAACTCCATGTGTTAGATTTGAGCAACAACAACATTACTGGTTCCATACCTAGTTCCATAGCA GACTTGGTGAATTTGGAAGTGCTAGACCTGTCATCAAATGATCTCTTTGGCTCAATCCCTCCTGCACTTGAAAGGCTCACATTCCTTTCAAGATTCAACG TCGCTGATAACCACTTGAAGGGGAAAATTCCAACTGGAGGTCAGTTCTCTAGCTTTTCCAACTCAAGCTTTGAAGGCAATTTGGGACTTTGTGGGGGAGT AGTTTCTCCTTGCGGAGATATTGAGACTATGTTGACTCCTGGTATACCATCTGGTTCAAAGGGTAAATTTGGTCGAGCCAATATTGTTGGTATAACGGTG GCTGTTGGAGTTGGATTGGCATTAATCCTTGGAATTGTTGTGGTTATGATGTCAAGAAGAGCCAGGGGAGATCTTATCAACAACCTGGATGAGGAAGGGA GCGAGTCACAGAGGTCATCTCAAGCACTTATGACATCCAAGTTGGTGCTTTTCCAAAATTCAGACTGCAAGGATCTTACAGTTACCGACTTGTTGAAAGC TACTAATAATTTCAGTCAAGCAAACATCATTGGCTGTGGGGGATTTGGCCTTGTTTACAAAGCCAACCTTCCAAATGGGAAAAAGGCTGCAATCAAGAAG CTTTCTGGAGATTGTGGGCAGATTGAGCGTGAATTTCAAGCCGAAGTTGAAGCACTCTCAAGGGCTCAACATAAAAATCTTGTTTCCCTTCAAGGTTATT GTAAGCATGGGAGTGACAGGCTATTGGTGTACTCATACATGGAGAATGGAAGCTTGGACTATTGGTTGCATGAGTGTGTTGATGGGCCTTCAGTTCTGCA ATGGGAAGCCAGGCTCAAGATTGCTAAAGGTGCAGCAAAGGGATTAGCTTACCTTCACAAAATCTGCGAGCCGCATATTGTTCACCGAGATGTTAAGTCT AGTAACATACTTTTGGATGAAAAATTTGAGGCTCATTTGGCCGATTTTGGTCTTTCAAGGCTATTACGGCCATATGATACTCATGTGACGACGGATTTGG TTGGGACCTTGGGTTATATTCCTCCTGAATATAGTCAAGCCCTGACGGCAACTTGCAGGGGTGATGTTTACAGTTTTGGGGTTGTGCTTCTTGAACTTCT CACATGTAGAAGGCCTGTAGAGGTATGCAAGGGGAAAAGCTGTAGGGACTTGGTATCCTGGGTATTCCAGATGAAGTTTGAGAAAAGGGTGTCCGAAATT ATAGACACTTCGATCTGGGACAAAGATCGGGAAAAGCAGCTAGTCGAAATGCTTGAAATAGCTTGCCGGTGCTTGGATCATGATCCCAGAAGGAGACCCT TCATCGAAGAAGTGGTTTCCTGCCTTGATGGTATTGGAGACACTTGA
AA sequence Show only first row Show all	>Lus10009213 pacid=23145595 polypeptide=Lus10009213 locus=Lus10009213.g ID=Lus10009213.BGIv1.0 annot-version=v1.0 MVKLGFLISLLKWLVLLCFLSSSLGYIHAINGQLYCNPNDLKALKEFAGSFNNGSLVASWSDDTKCCNWDGVSCGDYIISNGSRVTKLILPKHGLQGTIP TVLGSLDQLKSLDLSFNRLDGELPVELSGLKKLEFLDLSYNLLSGNISEVLSGMLSIRSFNISSNHFDDDLFQLVELPNLVVFNISNNSFTGPVSPRICS ISGGIAIVDLSMNNLVGCLEKLTNCSSSLQQLHLDGNMISGTLPPTLYSLPALQQLSISSNNFSGHLSEELSKLSSLTTFLVYGNRFSGQIPDVFDNLTE LEQFDAHSNSFSGPLPSTLSLCTKLRVLDLRNNTMSGPIDLNFSSMPHLNILDLATNRFFGSLPESLSDCHELKTLSLAKNVLNGSIPESYGMLSSLSFL SLSNNTVVNLHSALSVLQHCQNLTTLILTKNFIGDEIPVNVSGFESLAVFALGNCALRGQIPPWLLNCKKLQVLDLSWNRLDGGIPTWIGQMENLFYLDI SNNSLTGEIPESLMELKSLTSASPSAPSLISSAGIPLYVKRNRSGSGLQYKQVSSFPPSMYLSFNKINGTLLPKIGQLKQLHVLDLSNNNITGSIPSSIA DLVNLEVLDLSSNDLFGSIPPALERLTFLSRFNVADNHLKGKIPTGGQFSSFSNSSFEGNLGLCGGVVSPCGDIETMLTPGIPSGSKGKFGRANIVGITV AVGVGLALILGIVVVMMSRRARGDLINNLDEEGSESQRSSQALMTSKLVLFQNSDCKDLTVTDLLKATNNFSQANIIGCGGFGLVYKANLPNGKKAAIKK LSGDCGQIEREFQAEVEALSRAQHKNLVSLQGYCKHGSDRLLVYSYMENGSLDYWLHECVDGPSVLQWEARLKIAKGAAKGLAYLHKICEPHIVHRDVKS SNILLDEKFEAHLADFGLSRLLRPYDTHVTTDLVGTLGYIPPEYSQALTATCRGDVYSFGVVLLELLTCRRPVEVCKGKSCRDLVSWVFQMKFEKRVSEI IDTSIWDKDREKQLVEMLEIACRCLDHDPRRRPFIEEVVSCLDGIGDT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53890		AtPSKR2	phytosylfokine-alpha receptor ...		Lus10009213 [exp]	0	1
AT5G63930			Leucine-rich repeat protein ki...		Lus10011761 [exp]	3.3	0.8443
AT2G36350			Protein kinase superfamily pro...		Lus10020571 [exp]	6.2	0.8311
AT2G23340	AP2_ERF	DEAR3	DREB and EAR motif protein 3 (...		Lus10010043 [exp]	8.9	0.8001
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10039926 [exp]	9.8	0.8107
AT2G33170			Leucine-rich repeat receptor-l...		Lus10023681 [exp]	14.3	0.8005
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Lus10002014 [exp]	18.7	0.7744
AT3G09830			Protein kinase superfamily pro...		Lus10013811 [exp]	20.1	0.7298
AT5G24010			Protein kinase superfamily pro...		Lus10027509 [exp]	20.8	0.7366
AT1G08420		BSL2	BRI1 suppressor 1 (BSU1)-like ...		Lus10013357 [exp]	23.0	0.7980
AT3G23950			F-box family protein (.1)		Lus10007303 [exp]	24.9	0.7804

Compare expression of checked genes

Lus10009213 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.