Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49480 40 / 3e-05 B3 REM19, RTV1 related to vernalization1 1 (.1) AT3G18990 40 / 3e-05 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT2G24645 37 / 0.0004 Transcriptional factor B3 family protein (.1) AT3G06220 37 / 0.0006 B3 REM21 AP2/B3-like transcriptional factor family protein (.1) AT2G24650 37 / 0.0008 B3 REM13 DNA binding;DNA binding;sequence-specific DNA binding transcription factors (.1) AT2G24690 36 / 0.001 B3 REM11 Transcriptional factor B3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009688 [exp] 165 / 8e-52 AT3G18990 113 / 2e-28 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10036045 [exp] 152 / 5e-47 AT3G18990 110 / 2e-27 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10011624 [exp] 84 / 4e-22 AT5G52450 49 / 2e-07 MATE efflux family protein (.1) Lus10017380 [exp] 83 / 8e-22 ND / Lus10030721 [exp] 83 / 1e-21 AT1G20870 69 / 4e-14 HSP20-like chaperones superfamily protein (.1) Lus10025507 [exp] 74 / 3e-17 AT3G18990 91 / 1e-21 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10025533 [exp] 74 / 7e-17 AT1G06710 980 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026724 [exp] 63 / 2e-13 AT4G33280 42 / 2e-04 AP2/B3-like transcriptional factor family protein (.1) Lus10025505 [exp] 62 / 5e-13 ND 41 / 5e-04
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G191500 [exp] 50 / 1e-08 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 45 / 5e-07 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1) Potri.004G230100 [exp] 45 / 5e-07 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G146900 [exp] 42 / 1e-05 AT3G18990 353 / 6e-121 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.009G108500 [exp] 41 / 2e-05 AT3G18990 395 / 2e-137 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.012G012950 [exp] 40 / 2e-05 AT1G35520 49 / 9e-08 auxin response factor 15 (.1) Potri.014G036800 [exp] 40 / 3e-05 AT3G18990 92 / 3e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.012G012850 [exp] 39 / 6e-05 AT4G01500 49 / 6e-08 NGATHA4, AP2/B3-like transcriptional factor family protein (.1) Potri.014G036900 [exp] 37 / 0.0003 AT4G33280 256 / 5e-83 AP2/B3-like transcriptional factor family protein (.1) Potri.004G147000 [exp] 37 / 0.0004 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10009214 pacid=23145596 polypeptide=Lus10009214 locus=Lus10009214.g ID=Lus10009214.BGIv1.0 annot-version=v1.0 ATGCAGCATATACCTCTATGGTTTACGAGTCAGCAGAGAGCTTTCCAAGGTGAGAAACATGTGGAGCTGGAGGTTGGGGACAAGGCTTGGACAGTGAATC TCCAATGCAGAAGGTATGTAAAGTTTGCTAGGGGCTGGAAGAGCTTTGTGGAAGATAAGTCACTCAAAACTGGTGATGTTTGCACCTTCGAGCTCATCAA GGAATTGCCTAGCGTCTCCATGAAGGTCACCATCACCAGAGATGTCTAA
AA sequence Show only first row Show all	>Lus10009214 pacid=23145596 polypeptide=Lus10009214 locus=Lus10009214.g ID=Lus10009214.BGIv1.0 annot-version=v1.0 MQHIPLWFTSQQRAFQGEKHVELEVGDKAWTVNLQCRRYVKFARGWKSFVEDKSLKTGDVCTFELIKELPSVSMKVTITRDV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49480	B3	REM19, RTV1	related to vernalization1 1 (....		Lus10009214 [exp]	0	1
AT5G01910			unknown protein		Lus10035364 [exp]	1.0	0.8727
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10041961 [exp]	1.7	0.8333
AT5G17260	NAC	ANAC086	NAC domain containing protein ...		Lus10010371 [exp]	4.9	0.8176
AT3G01460		MBD9, ATMBD9	methyl-CPG-binding domain 9 (....		Lus10030624 [exp]	5.7	0.7866
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10011716 [exp]	6.0	0.8399
AT5G23200			unknown protein		Lus10017393 [exp]	6.0	0.7826
AT5G01110			Tetratricopeptide repeat (TPR)...		Lus10028943 [exp]	6.2	0.7260
AT3G44716			unknown protein		Lus10009406 [exp]	8.8	0.7839
AT2G20020		CAF1, ATCAF1	RNA-binding CRS1 / YhbY (CRM) ...		Lus10034952 [exp]	10.2	0.8054
AT3G22630		PRCGB, PBD1	20S proteasome beta subunit D1...		Lus10006596 [exp]	11.5	0.8030

Compare expression of checked genes

Lus10009214 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.