Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24090 371 / 6e-130 ATCHIA chitinase A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023535 [exp] 503 / 0 AT5G24090 363 / 7e-127 chitinase A (.1) Lus10040420 [exp] 500 / 0 AT5G24090 361 / 5e-126 chitinase A (.1) Lus10037985 [exp] 496 / 2e-179 AT5G24090 357 / 2e-124 chitinase A (.1) Lus10009216 [exp] 496 / 2e-179 AT5G24090 360 / 1e-125 chitinase A (.1) Lus10040419 [exp] 441 / 1e-157 AT5G24090 362 / 3e-126 chitinase A (.1) Lus10023534 [exp] 430 / 3e-153 AT5G24090 355 / 1e-123 chitinase A (.1) Lus10001868 [exp] 367 / 2e-128 AT5G24090 332 / 1e-114 chitinase A (.1) Lus10010137 [exp] 361 / 4e-126 AT5G24090 330 / 1e-113 chitinase A (.1) Lus10037984 [exp] 353 / 5e-121 AT5G24090 322 / 1e-108 chitinase A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G165700 [exp] 462 / 7e-166 AT5G24090 396 / 9e-140 chitinase A (.1) Potri.014G091700 [exp] 456 / 1e-163 AT5G24090 340 / 1e-117 chitinase A (.1) Potri.002G242000 [exp] 448 / 2e-160 AT5G24090 387 / 3e-136 chitinase A (.1) Potri.014G091600 [exp] 410 / 3e-145 AT5G24090 362 / 3e-126 chitinase A (.1) Potri.015G024200 [exp] 393 / 1e-138 AT5G24090 407 / 4e-144 chitinase A (.1) Potri.012G033866 [exp] 371 / 4e-130 AT5G24090 352 / 3e-122 chitinase A (.1) Potri.015G024000 [exp] 363 / 4e-127 AT5G24090 337 / 2e-116 chitinase A (.1) Potri.015G024100 [exp] 363 / 4e-127 AT5G24090 336 / 4e-116 chitinase A (.1) Potri.015G024150 [exp] 359 / 3e-125 AT5G24090 329 / 3e-113 chitinase A (.1) Potri.015G023900 [exp] 359 / 3e-125 AT5G24090 329 / 3e-113 chitinase A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00704 [flax] [poplar] Glyco_hydro_18 Glycosyl hydrolases family 18
Representative CDS sequence Show only first row Show all	>Lus10009215 pacid=23160186 polypeptide=Lus10009215 locus=Lus10009215.g ID=Lus10009215.BGIv1.0 annot-version=v1.0 ATGACATCATTCAAGGCAGCCATCACAATATTACTCTTCCTGTCAGCAATTATTCTGGGTTCTGAAGCTGGCGGAATATCAATCTACTGGGGACAGAACG GACAGGAGGGAACCCTAGCTGAGACTTGCGCCACAGGAAACTATCACTACGTCAACATAGCATTCCTCTCAGCATTTGGCAACGGACTCCCACCGGTAAT CAACCTCGCAGGCCACTGTGATCCAACCAACAGCGGCTGTGCAGGCCTAACCTCCGACATCAACTCATGCCAATCTAAAGGGGTCAAAGTGTTGCTTTCA ATTGGTGGAGGAGCTGGCGGATACTACCTTGCATCTACACAAGACGCACAGCAAGTTGCCACTTACCTTTGGGACAACTTCTTGGGTGGACACTCTTCTG CACGTCCACTTGGTCCAGCTGTGCTTGATGGGATTGACTTCGACATCGAAGGAGGAACCAACCAACATTGGGATGATCTTGCCAGGTTTTTGAAACGTCA CGACGACAATGTTATATTGACCGCAGCCCCTCAGTGTCCATTCCCTGATGCTTGGATAGGAGAAGCACTTAAGACTGGACTGTTTGACTATGTTTGGATT CAGTTCTACAACAATCCTCCTTGCCAGTACTCTTCTGGGAGTATCACCAACCTTGAAGATGCGTGGAAGCAATGGACTTCTGCTATTCCTGCAAAGAAGA TCTTTCTCGGATTGCCTGCTGCACCGGATGCTGCTGGGAGTGGTTTCGTCCCAGCGAATGACCTCGAATCTCAGATCCTACCCGTGATCAAGGACAGTTC TAAATATGGTGGGGTGATGCTTTGGTCAAAGTACTATGATGATCAAACCGGTTACAGCAAATCCATAAAGAACTCTGTCTAA
AA sequence Show only first row Show all	>Lus10009215 pacid=23160186 polypeptide=Lus10009215 locus=Lus10009215.g ID=Lus10009215.BGIv1.0 annot-version=v1.0 MTSFKAAITILLFLSAIILGSEAGGISIYWGQNGQEGTLAETCATGNYHYVNIAFLSAFGNGLPPVINLAGHCDPTNSGCAGLTSDINSCQSKGVKVLLS IGGGAGGYYLASTQDAQQVATYLWDNFLGGHSSARPLGPAVLDGIDFDIEGGTNQHWDDLARFLKRHDDNVILTAAPQCPFPDAWIGEALKTGLFDYVWI QFYNNPPCQYSSGSITNLEDAWKQWTSAIPAKKIFLGLPAAPDAAGSGFVPANDLESQILPVIKDSSKYGGVMLWSKYYDDQTGYSKSIKNSV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24090		ATCHIA	chitinase A (.1)		Lus10009215 [exp]	0	1
AT5G14780		FDH	formate dehydrogenase (.1)		Lus10014535 [exp]	9.1	0.7055
AT1G32400		TOM2A	tobamovirus multiplication 2A ...		Lus10040108 [exp]	14.8	0.6802
AT3G43790		ZIFL2	zinc induced facilitator-like ...		Lus10041286 [exp]	18.0	0.6654
AT1G73750			Uncharacterised conserved prot...		Lus10007966 [exp]	20.1	0.6694
					Lus10006661 [exp]	22.9	0.6671
					Lus10007179 [exp]	25.6	0.6671
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Lus10009378 [exp]	28.0	0.6671
					Lus10012429 [exp]	30.3	0.6671
					Lus10022573 [exp]	32.4	0.6671
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10038264 [exp]	34.3	0.6671

Compare expression of checked genes

Lus10009215 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.