Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24090 360 / 1e-125 ATCHIA chitinase A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037985 [exp] 589 / 0 AT5G24090 357 / 2e-124 chitinase A (.1) Lus10023535 [exp] 489 / 2e-176 AT5G24090 363 / 7e-127 chitinase A (.1) Lus10009215 [exp] 483 / 3e-174 AT5G24090 371 / 6e-130 chitinase A (.1) Lus10040420 [exp] 483 / 3e-174 AT5G24090 361 / 5e-126 chitinase A (.1) Lus10040419 [exp] 409 / 6e-145 AT5G24090 362 / 3e-126 chitinase A (.1) Lus10023534 [exp] 403 / 2e-142 AT5G24090 355 / 1e-123 chitinase A (.1) Lus10001868 [exp] 362 / 2e-126 AT5G24090 332 / 1e-114 chitinase A (.1) Lus10010137 [exp] 360 / 2e-125 AT5G24090 330 / 1e-113 chitinase A (.1) Lus10037984 [exp] 337 / 1e-114 AT5G24090 322 / 1e-108 chitinase A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G091700 [exp] 446 / 1e-159 AT5G24090 340 / 1e-117 chitinase A (.1) Potri.002G165700 [exp] 446 / 1e-159 AT5G24090 396 / 9e-140 chitinase A (.1) Potri.002G242000 [exp] 422 / 4e-150 AT5G24090 387 / 3e-136 chitinase A (.1) Potri.014G091600 [exp] 387 / 4e-136 AT5G24090 362 / 3e-126 chitinase A (.1) Potri.015G024200 [exp] 376 / 6e-132 AT5G24090 407 / 4e-144 chitinase A (.1) Potri.012G033866 [exp] 360 / 1e-125 AT5G24090 352 / 3e-122 chitinase A (.1) Potri.014G092800 [exp] 356 / 5e-124 AT5G24090 345 / 2e-119 chitinase A (.1) Potri.015G024000 [exp] 353 / 5e-123 AT5G24090 337 / 2e-116 chitinase A (.1) Potri.015G024100 [exp] 353 / 8e-123 AT5G24090 336 / 4e-116 chitinase A (.1) Potri.015G024150 [exp] 352 / 2e-122 AT5G24090 329 / 3e-113 chitinase A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00704 [flax] [poplar] Glyco_hydro_18 Glycosyl hydrolases family 18
Representative CDS sequence Show only first row Show all	>Lus10009216 pacid=23160155 polypeptide=Lus10009216 locus=Lus10009216.g ID=Lus10009216.BGIv1.0 annot-version=v1.0 ATGGCATTCAGGAAAACCATGACAACGGTGATCTTCCTAGCAATTCTGGCCATACTGGCGATGGTTTCTGAAGCCGGAAGAATATCAATCTACTGGGGAC AGAACGACGACAAAGAAGGCACCCTAGCTGAGACTTGTGCAACAGGAAACTACCATTATGTCAACATAGCTTTCTTGTCAGCATTTGGAAATGGACAGAA ACCAGAAATCAACCTTTCGGGCCACTGCGATACAACCAACAGCGGCTGTGCAGGTCTAAGCTCTGACATCAAGTCGTGCCAAGCTAAAGGGATTAAAGTA CTGCTTTCAATCGGTGGGGGAGCTGGCGGTTACGATCTCGCTTCAACCCATGATGCAGAGCAAGTTGCAGGTTACCTTTGGGACAACTTCATGGGTGGAC ACTCTTCTACACGCCCACTTGGTCCGGCTGTACTTGATGGGATTGACTTTGACATCGAAGGAGGCAAAGGCAAGCACTGGGATCATCTAGCAACATCATT GAGAGGTCATGATGGAAATGTCATGCTCACTGCAGCTCCTCAGTGTCCATTCCCTGATGCTTGGATAGGAAGTGCACTTCAGACTGGGCTATTTGACTAT GTTTGGGTTCAATTCTATAACAACCCTCCTTGCCAATATGCTTCTGGGAGTATCACAAACCTTGAAGATGCATGGAAGCAATGGACTTCTGCGATTCCCG CAAAGAAGATCTTCCTCGGATTGCCTGCTGCACCGGATGCAGCTGGGAGCGGTTTCATCCCAGCGACTGACCTCAAATCTCAGGTCCTCCCTGTGATCAA GGACAGTTCCAAGTATGGTGGTGTGATGCTGTGGTCAAAGTTCTATGACGATGAAACTGGTTATAGCAAATCCATCAAGAACTCTGTCTAA
AA sequence Show only first row Show all	>Lus10009216 pacid=23160155 polypeptide=Lus10009216 locus=Lus10009216.g ID=Lus10009216.BGIv1.0 annot-version=v1.0 MAFRKTMTTVIFLAILAILAMVSEAGRISIYWGQNDDKEGTLAETCATGNYHYVNIAFLSAFGNGQKPEINLSGHCDTTNSGCAGLSSDIKSCQAKGIKV LLSIGGGAGGYDLASTHDAEQVAGYLWDNFMGGHSSTRPLGPAVLDGIDFDIEGGKGKHWDHLATSLRGHDGNVMLTAAPQCPFPDAWIGSALQTGLFDY VWVQFYNNPPCQYASGSITNLEDAWKQWTSAIPAKKIFLGLPAAPDAAGSGFIPATDLKSQVLPVIKDSSKYGGVMLWSKFYDDETGYSKSIKNSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24090		ATCHIA	chitinase A (.1)		Lus10009216 [exp]	0	1
AT3G21550		AtDMP2	Arabidopsis thaliana DUF679 do...		Lus10021955 [exp]	8.2	0.9047
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Lus10007243 [exp]	11.8	0.8967
AT4G00230		XSP1	xylem serine peptidase 1 (.1)		Lus10009313 [exp]	15.6	0.8935
AT3G07970		QRT2	QUARTET 2, Pectin lyase-like s...		Lus10042371 [exp]	17.0	0.8853
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Lus10028243 [exp]	18.7	0.8863
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10020331 [exp]	25.5	0.8666
AT5G04010			F-box family protein (.1)		Lus10035421 [exp]	27.3	0.8754
AT1G23460			Pectin lyase-like superfamily ...		Lus10029139 [exp]	27.7	0.8704
AT2G35930		PUB23	plant U-box 23 (.1)		Lus10021267 [exp]	31.2	0.8742
AT1G54790			GDSL-like Lipase/Acylhydrolase...		Lus10029981 [exp]	34.7	0.8603

Compare expression of checked genes

Lus10009216 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.