Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15910 632 / 0 FDM1 factor of DNA methylation 1, XH/XS domain-containing protein (.1) AT4G00380 614 / 0 FDM2 factor of DNA methylation 2, XH/XS domain-containing protein (.1) AT1G80790 575 / 0 FDM5 factor of DNA methylation 5, XH/XS domain-containing protein (.1) AT3G48670 435 / 5e-145 RDM12, IDN2 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) AT3G12550 385 / 7e-126 FDM3 factor of DNA methylation 3, XH/XS domain-containing protein (.1.2) AT1G13790 340 / 3e-107 FDM4 factor of DNA methylation 4, XH/XS domain-containing protein (.1) AT5G59390 277 / 3e-85 XH/XS domain-containing protein (.1) AT4G01180 273 / 1e-83 XH/XS domain-containing protein (.1) AT4G01780 218 / 8e-64 XH/XS domain-containing protein (.1) AT3G29375 173 / 2e-48 XH domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037986 [exp] 1202 / 0 AT1G15910 645 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10026076 [exp] 727 / 0 AT1G15910 608 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10002702 [exp] 506 / 1e-172 AT3G48670 669 / 0.0 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10000951 [exp] 499 / 5e-170 AT3G48670 670 / 0.0 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10037987 [exp] 439 / 4e-146 AT5G54570 662 / 0.0 beta glucosidase 41 (.1) Lus10002703 [exp] 396 / 3e-128 AT3G48670 495 / 3e-166 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10032933 [exp] 231 / 8e-69 AT1G13790 261 / 9e-80 factor of DNA methylation 4, XH/XS domain-containing protein (.1) Lus10000949 [exp] 209 / 2e-59 AT3G48670 319 / 2e-100 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10002305 [exp] 185 / 1e-54 AT3G48670 161 / 1e-46 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G181000 [exp] 775 / 0 AT1G15910 626 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Potri.010G202700 [exp] 527 / 1e-179 AT3G48670 716 / 0.0 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Potri.010G184800 [exp] 400 / 5e-131 AT1G13790 526 / 1e-178 factor of DNA methylation 4, XH/XS domain-containing protein (.1) Potri.001G240666 [exp] 188 / 4e-53 AT1G13790 228 / 3e-67 factor of DNA methylation 4, XH/XS domain-containing protein (.1) Potri.001G037101 [exp] 43 / 0.0007 AT5G23570 334 / 4e-106 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.T045700 [exp] 43 / 0.0007 AT5G23570 604 / 0.0 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.018G137400 [exp] 43 / 0.0008 AT5G23570 603 / 0.0 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03470 [flax] [poplar] zf-XS XS zinc finger domain PF03469 [flax] [poplar] XH XH domain CL0221 [flax] [poplar] RRM PF03468 [flax] [poplar] XS XS domain
Representative CDS sequence Show only first row Show all	>Lus10009217 pacid=23160194 polypeptide=Lus10009217 locus=Lus10009217.g ID=Lus10009217.BGIv1.0 annot-version=v1.0 ATGAGTCATTCTTCTGGATCTGACGAAGAGTCAGACATCAGTGAATCGGAGATTGTTGATCATGTGGACAAACCATATGAGCTGCTGAGATCTCAGCATT ACAAAGTGCAAGTTAACGGGACATTGAGATGCCCTTTCTGTGCTGGGAAGAAGAAACAAGGATATAAATACAAAGATTTGCTTCAGCATGCATCCGGGGT GGGCAGGGGCTCTGCCAATAGAAGTGGCAAGCAGAAAGCTAACCATCTTGCCTTGGCAAAGTACGTGGAAGTTGATTTGGCTCATCTGGCAGATGAGACT CTGACTCGACCTACCCCACCACCCCCTGTTACCTCTCCTGATCAAGAAGACAAGTTTGCTTGGCCATGGACGGGCATTGTTGTCAACATATCTGCAAATT CTGAAGTCCAGGATGGTGACTACTGGTTGAAAGAATTTGAAATCTATAGGCCTGCAAAAGTGCATATGTTGTGGGATGAAAAGAACCATACCGGTCAGGC CATTGTGCAATTTGAAAGTGACTGGAATGGTTTCACCAAAGCAACTGATTTTGAGAAATCCTTTGAAGGTAAGCGTCATGGTAAAAAGGATTGGAAGGCA CGTGAACAATATCTTGGCTCGAATATATATGGCTGGTGTGCACGTCGTGATGACTACGATTCAGAGGGGCCAATAGGAGAGTATCTTCGTAAAGAAACAA AGTTGACAACTATTTCTGGGATTGTCCAAGAAACCAATGCAAGTAGAAATACTGTTGTAGCAAGCCTGACTGAAGAAATTGCTAAGACCAATCAAAATCT GGATAAATTACAAAGCATGTACAATGAGAATGCTATGTCATTAAGCAGAACGCTTGAAGAGAAAGATAAGCTGCATCATACTTTTGTTGAAGAAACAAGG AAGATGCAGCGGCTTGCACGAGAAAATGTTCATAGAATCTTGGCTGAGCAAGAAAAAATGAACAATGAATTGGAATCGAGGAAAAGGAAAATTGATAGCT GGACTAAAGAATTAAACAAGAGAGAAGCATTGACAGATCGTGAGAGGCAAAAGCTTGAAGAAGACATGAAGAAGAATAGCAAGGTAAACAATTCACTTGA ATTGGCATCCATGGAGCAAAAGAAGGCTGATGAGAATGTACTAAGATTGGTTGAAGAGCAACAGAGGGAGAAAGAAGAGGCCTTGCGTAAAATCATACAA CTGGAAAAGCAACTTGATGCAAGACAAAAGCTGGAAATGGAAATCCAAGAGCTAAAAGGGAAACTAAATGTGATGAAGCATCTTGAGGATCAGGATGATG CAGCTGTTAAGAAGACCATGGAAGAGTACAATAAGGAGTTGGAGCAGAAGATAGACGATCTTTCTAGCGTGGAGGAATTAAATCAAACTCTCATTGTCAA AGAGCGACAGAGCAATGATGAGCTTCAAGAAGCACGTAAAACACTGATACAGGCCCTGCTAGATACATTATCTGGTCATCGAACTAACATTGGGATAAAG AGGATGGGCGAACTTGATGAGAAGGTTTTTCTTAACGGATGCAAACAGAGATTTTCAAAAGAGGATTGTGAAATGCAAGCTTCAATTCTATGCAGCTTAT GGCAGAAGCACTTGCAAGATCAAGAGTGGCATCCCTTCAAAGTCATTGTGTCTGAGGGGAATGCAAAGGAAATTCTAAACGAGGAAGATGAAAGGTTGAA AGGTCTTAAGAAGGAATGTGGTGAGGAGATATACCATGCTGTTGTAACATCCTTGAAGGAATTGAATGAGTATAACCCAAGTGGGAGGTACACCATTCCT GAGCTCTGGAATTTCAAAGAAGGAAGGAAAGGCACATTGAAAGAAGTTATAGGTTACATCATGAAGCAAATCAAGACCATCAAGCGGAGGAAGAACTTTT AA
AA sequence Show only first row Show all	>Lus10009217 pacid=23160194 polypeptide=Lus10009217 locus=Lus10009217.g ID=Lus10009217.BGIv1.0 annot-version=v1.0 MSHSSGSDEESDISESEIVDHVDKPYELLRSQHYKVQVNGTLRCPFCAGKKKQGYKYKDLLQHASGVGRGSANRSGKQKANHLALAKYVEVDLAHLADET LTRPTPPPPVTSPDQEDKFAWPWTGIVVNISANSEVQDGDYWLKEFEIYRPAKVHMLWDEKNHTGQAIVQFESDWNGFTKATDFEKSFEGKRHGKKDWKA REQYLGSNIYGWCARRDDYDSEGPIGEYLRKETKLTTISGIVQETNASRNTVVASLTEEIAKTNQNLDKLQSMYNENAMSLSRTLEEKDKLHHTFVEETR KMQRLARENVHRILAEQEKMNNELESRKRKIDSWTKELNKREALTDRERQKLEEDMKKNSKVNNSLELASMEQKKADENVLRLVEEQQREKEEALRKIIQ LEKQLDARQKLEMEIQELKGKLNVMKHLEDQDDAAVKKTMEEYNKELEQKIDDLSSVEELNQTLIVKERQSNDELQEARKTLIQALLDTLSGHRTNIGIK RMGELDEKVFLNGCKQRFSKEDCEMQASILCSLWQKHLQDQEWHPFKVIVSEGNAKEILNEEDERLKGLKKECGEEIYHAVVTSLKELNEYNPSGRYTIP ELWNFKEGRKGTLKEVIGYIMKQIKTIKRRKNF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10009217 [exp]	0	1
AT3G27530		MAG4, GC6	MAIGO 4, golgin candidate 6 (....		Lus10035230 [exp]	2.2	0.9357
AT1G49350			pfkB-like carbohydrate kinase ...		Lus10010290 [exp]	6.0	0.9265
AT1G07650			Leucine-rich repeat transmembr...		Lus10010951 [exp]	6.0	0.9192
AT5G35750		AHK2	histidine kinase 2 (.1)		Lus10006370 [exp]	7.6	0.8993
AT2G44140			Peptidase family C54 protein (...		Lus10027079 [exp]	10.3	0.9348
AT3G22960		PKP-ALPHA, PKP1	PLASTIDIAL PYRUVATE KINASE 1, ...		Lus10033757 [exp]	12.0	0.8714
AT3G55530		SDIR1	SALT- AND DROUGHT-INDUCED RING...		Lus10002706 [exp]	13.8	0.9240
AT3G03740		ATBPM4	BTB-POZ and MATH domain 4 (.1)		Lus10008421 [exp]	14.3	0.8936
AT5G13760			Plasma-membrane choline transp...		Lus10039585 [exp]	15.2	0.9197
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Lus10032200 [exp]	15.9	0.9016

Compare expression of checked genes

Lus10009217 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.