Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03300 502 / 5e-176 ADK2 adenosine kinase 2 (.1) AT3G09820 490 / 3e-171 ADK1, ATADK1 adenosine kinase 1 (.1.2) AT2G37040 145 / 2e-36 PAL1, ATPAL1 PHE ammonia lyase 1 (.1) AT3G53260 141 / 4e-35 PAL2, ATPAL2 phenylalanine ammonia-lyase 2 (.1) AT3G10340 132 / 4e-32 PAL4 phenylalanine ammonia-lyase 4 (.1) AT5G04230 115 / 1e-26 PAL3, ATPAL3 phenyl alanine ammonia-lyase 3 (.1.2) AT1G17160 54 / 2e-07 pfkB-like carbohydrate kinase family protein (.1.2) AT1G19600 49 / 4e-06 pfkB-like carbohydrate kinase family protein (.1) AT4G27600 49 / 8e-06 NARA5 GENES NECESSARY FOR THE ACHIEVEMENT OF RUBISCO ACCUMULATION 5, pfkB-like carbohydrate kinase family protein (.1) AT1G66430 44 / 0.0004 pfkB-like carbohydrate kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023532 [exp] 555 / 0 AT5G03300 599 / 0.0 adenosine kinase 2 (.1) Lus10040417 [exp] 537 / 0 AT5G03300 599 / 0.0 adenosine kinase 2 (.1) Lus10023197 [exp] 503 / 1e-176 AT5G03300 590 / 0.0 adenosine kinase 2 (.1) Lus10023021 [exp] 469 / 2e-163 AT5G03300 546 / 0.0 adenosine kinase 2 (.1) Lus10040416 [exp] 161 / 8e-42 AT2G37040 1194 / 0.0 PHE ammonia lyase 1 (.1) Lus10023531 [exp] 158 / 9e-41 AT2G37040 1198 / 0.0 PHE ammonia lyase 1 (.1) Lus10026518 [exp] 133 / 2e-32 AT2G37040 1256 / 0.0 PHE ammonia lyase 1 (.1) Lus10013805 [exp] 128 / 8e-31 AT2G37040 1245 / 0.0 PHE ammonia lyase 1 (.1) Lus10017969 [exp] 104 / 5e-23 AT4G39050 1517 / 0.0 Kinesin motor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G038100 [exp] 526 / 0 AT5G03300 622 / 0.0 adenosine kinase 2 (.1) Potri.010G224300 [exp] 525 / 0 AT5G03300 620 / 0.0 adenosine kinase 2 (.1) Potri.008G038200 [exp] 152 / 5e-39 AT2G37040 1213 / 0.0 PHE ammonia lyase 1 (.1) Potri.010G224100 [exp] 152 / 7e-39 AT3G53260 1240 / 0.0 phenylalanine ammonia-lyase 2 (.1) Potri.010G224200 [exp] 149 / 7e-38 AT2G37040 1228 / 0.0 PHE ammonia lyase 1 (.1) Potri.006G126800 [exp] 138 / 4e-34 AT2G37040 1269 / 0.0 PHE ammonia lyase 1 (.1) Potri.016G091100 [exp] 134 / 6e-33 AT2G37040 1267 / 0.0 PHE ammonia lyase 1 (.1) Potri.005G229100 [exp] 61 / 1e-09 AT1G19600 558 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.002G034000 [exp] 57 / 1e-08 AT1G19600 556 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.011G114100 [exp] 51 / 2e-06 AT1G17160 474 / 8e-168 pfkB-like carbohydrate kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0118 [flax] [poplar] Ribokinase PF00294 [flax] [poplar] PfkB pfkB family carbohydrate kinase
Representative CDS sequence Show only first row Show all	>Lus10009220 pacid=23160180 polypeptide=Lus10009220 locus=Lus10009220.g ID=Lus10009220.BGIv1.0 annot-version=v1.0 ATGCAGAAGCTAAGGCAATTGCTGGTCGACCACGCATTGTCGAATGAAAAAGACTCGAAAAGTTCCATCTTCCACGAGATAGGAGTGTTTGAGGAAGAGC TAAAGGAGATCCTGGCTAAAGAGGTTGAAAATGCAAAGAGTGAGCTGGAAAATGGGAACCCGGCTATTCCAAACAGGATACAGGAATGTAGGTCGTACCC ATTGTACAGGTTTGTGAGGGAGGAAGTGGGTAAAAGTTTGTTAACTGGGGAGAAGGTTCAATCCCCAGGCGAGGAATTCGACAAGCAATGTATTCTACAC TCAGATCTCGATTGGGCACTTGGACTGATAAGAAATATACTTTCTCCCTCATTCCAACAATCAATTGAAGAGGGAAGGAGGAATGTCACCGAGTTTAACA CCGACGAGAGGACCAGTACTGGAGCTGGGAATCACATGAGCGAACAGGGATCGAGCGCGTTCGAGCATGGTTCTCTCTTGATAAAAAGACAAGTCGGCAG CGATGATTTGAAGCGAGCCGATGAAATGCAAAAGGAAGAGCCGTTGGTTGTTCGTTTGAAGAAAACAAGAGAGGTGAAACATACTTGCAAAGAAATGGAG CAGGAGGGTATCTTGTTGGGCATGGGAAATCCACTCCTTGACATCTCTGCCGTTGTCGATCAGGCCTTCTTGACCAAGTGTGTCTCCCAACCAACTTTGT ATTCTTTGTTTAATCGGAAATTTGATGTTCCCGCCGATCTGGGTTTTCTTAATTATAACTGGAAAGATATGTTCTTTGTTGCTTGGATGCCGCCCGGAAG TGTTTCCCAGTGGTGGCCGCGGCATCCAATGATTGCTCTGTCATCATATGATAGGTATGGCATCAAGGTAAACGATGCTATTCTTGCCCAGGACAAGCAC TTGCCTATGTACGATGAAATGTTGAGCAGATACAATGTGGATTACATTGCAGGAGGTTCCACTCAAAATACCATTAGAGTTGCCCAGTGGATGATGCAAA AACCTTGTTCAACAAGCTATATTGGTTGCATTGGGCAGGACAAGTTTGGAGAAGAGATGAAGAAAAATGCTAAGCAAGCTGGAGTAAATGTACACTATTG TGAGGATGAGGCTGCTTCAACTGGAACATGTGCTGTCTGTGTTGTTGGTGGTGAGAGCTCACTTGTTGCAAATTTGTCCGCTGCCAACTGTTACAAGGCT GATCATTTGAAGCAATCTGAGAACTGGGCACTAGTTGAGAAGGCTAGATACTACTACATTGCTGGATTCTTCTTGACCGTGTCCCCTGAATCTATCCTAC TAGTTGCAGAACATGCTGCTGTAACGAACAAGATGTTCTTGACCAACCTTTCTGCTCCATTCATCTGCGAGTTCTTCAATGATGTCCTAGAAAAAGTATT GGTTTATGCAGACTTCGTGTTCGGGATAGGGATTGAAGCTAGGATGTTTGCAAAGGTTCATGGTTGGGAGACTCAGAATGTGGAGGAGATTGCCATAAGG ATTTCCCAGTGGCCTAAGGCTTCCGAGTCACGCAAGAGGATTGTGGTGATCACACGGGGTGCAGAACCTACCATTGTTGCAGAGGACGGGAAGGTTACAT TATTCCCAGTTACATTGCTTCCAAAGGAAAAGTTGGTCGACACGAATGGAACTGGGGATGCATTTGTTGGCGGGTTTCTGTCACAATTGGTGCAAGAGAA GGACATTGAAGAGTGTGTGAGAGCAGGTACATATGCAGCCAACGTGATCATCCAGAGGTCTGGCTGTACATACCCAGAGAGGCCAGAGTTCAATTAG
AA sequence Show only first row Show all	>Lus10009220 pacid=23160180 polypeptide=Lus10009220 locus=Lus10009220.g ID=Lus10009220.BGIv1.0 annot-version=v1.0 MQKLRQLLVDHALSNEKDSKSSIFHEIGVFEEELKEILAKEVENAKSELENGNPAIPNRIQECRSYPLYRFVREEVGKSLLTGEKVQSPGEEFDKQCILH SDLDWALGLIRNILSPSFQQSIEEGRRNVTEFNTDERTSTGAGNHMSEQGSSAFEHGSLLIKRQVGSDDLKRADEMQKEEPLVVRLKKTREVKHTCKEME QEGILLGMGNPLLDISAVVDQAFLTKCVSQPTLYSLFNRKFDVPADLGFLNYNWKDMFFVAWMPPGSVSQWWPRHPMIALSSYDRYGIKVNDAILAQDKH LPMYDEMLSRYNVDYIAGGSTQNTIRVAQWMMQKPCSTSYIGCIGQDKFGEEMKKNAKQAGVNVHYCEDEAASTGTCAVCVVGGESSLVANLSAANCYKA DHLKQSENWALVEKARYYYIAGFFLTVSPESILLVAEHAAVTNKMFLTNLSAPFICEFFNDVLEKVLVYADFVFGIGIEARMFAKVHGWETQNVEEIAIR ISQWPKASESRKRIVVITRGAEPTIVAEDGKVTLFPVTLLPKEKLVDTNGTGDAFVGGFLSQLVQEKDIEECVRAGTYAANVIIQRSGCTYPERPEFN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03300		ADK2	adenosine kinase 2 (.1)		Lus10009220 [exp]	0	1
AT5G54290		CcdA	cytochrome c biogenesis protei...		Lus10037881 [exp]	1.7	0.9000
AT2G17695			unknown protein		Lus10028386 [exp]	7.4	0.8807
AT1G72610		ATGER1, GLP1	A. THALIANA GERMIN-LIKE PROTEI...		Lus10002795 [exp]	10.9	0.8979
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10016025 [exp]	11.1	0.8313
AT1G13570			F-box/RNI-like superfamily pro...		Lus10011048 [exp]	12.4	0.8935
AT1G56000			FAD/NAD(P)-binding oxidoreduct...		Lus10013734 [exp]	13.8	0.8319
AT2G17800		ARAC1, ATGP2, A...	RHO-RELATED GTPASES FROM PLANT...		Lus10025959 [exp]	14.5	0.8549
AT5G39790			5'-AMP-activated protein kinas...		Lus10028512 [exp]	16.8	0.8740
AT1G22630			unknown protein		Lus10018614 [exp]	19.9	0.8885
AT1G01630			Sec14p-like phosphatidylinosit...		Lus10040252 [exp]	21.5	0.8588

Compare expression of checked genes

Lus10009220 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.