Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46210 387 / 3e-138 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6) AT2G07110 90 / 2e-22 unknown protein AT3G61620 89 / 5e-21 RRP41 3'-5'-exoribonuclease family protein (.1.2) AT4G27490 71 / 2e-14 3'-5'-exoribonuclease family protein (.1) AT3G03710 55 / 1e-08 PDE326, PNP, RIF10 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1) AT5G14580 47 / 7e-06 polyribonucleotide nucleotidyltransferase, putative (.1) AT3G44130 40 / 0.0006 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037991 [exp] 468 / 1e-169 AT3G46210 377 / 1e-133 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6) Lus10037395 [exp] 66 / 2e-12 AT4G27490 409 / 2e-146 3'-5'-exoribonuclease family protein (.1) Lus10005148 [exp] 64 / 1e-11 AT3G61620 376 / 4e-133 3'-5'-exoribonuclease family protein (.1.2) Lus10003036 [exp] 62 / 3e-11 AT3G61620 370 / 9e-131 3'-5'-exoribonuclease family protein (.1.2) Lus10041318 [exp] 59 / 5e-10 AT4G27490 414 / 4e-148 3'-5'-exoribonuclease family protein (.1) Lus10013636 [exp] 49 / 1e-06 AT3G03710 1148 / 0.0 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1) Lus10000255 [exp] 48 / 1e-06 AT3G61620 280 / 4e-97 3'-5'-exoribonuclease family protein (.1.2) Lus10001332 [exp] 49 / 2e-06 AT3G03710 954 / 0.0 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1) Lus10008763 [exp] 42 / 0.0002 AT5G14580 1215 / 0.0 polyribonucleotide nucleotidyltransferase, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G043600 [exp] 427 / 1e-153 AT3G46210 404 / 2e-144 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6) Potri.006G239100 [exp] 293 / 3e-101 AT3G46210 295 / 4e-102 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6) Potri.014G094300 [exp] 72 / 5e-15 AT3G61620 379 / 6e-135 3'-5'-exoribonuclease family protein (.1.2) Potri.004G212500 [exp] 72 / 1e-14 AT4G27490 392 / 2e-139 3'-5'-exoribonuclease family protein (.1) Potri.009G010600 [exp] 69 / 9e-14 AT4G27490 394 / 3e-140 3'-5'-exoribonuclease family protein (.1) Potri.019G040100 [exp] 59 / 1e-09 AT3G03710 1197 / 0.0 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1) Potri.013G065700 [exp] 55 / 2e-08 AT3G03710 1205 / 0.0 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1) Potri.001G347900 [exp] 44 / 6e-05 AT5G14580 1224 / 0.0 polyribonucleotide nucleotidyltransferase, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [flax] [poplar] S5 PF01138 [flax] [poplar] RNase_PH 3' exoribonuclease family, domain 1
Representative CDS sequence Show only first row Show all	>Lus10009221 pacid=23160168 polypeptide=Lus10009221 locus=Lus10009221.g ID=Lus10009221.BGIv1.0 annot-version=v1.0 ATGGAGATAGACAGAAACGATGGCCGCACTGCGAACCAGCTGAGGCCGCTGGGTTGCTCTCGCAGCATCCTCCACCGCGCGCACGGATCCGCCAGTTGGT CTCAAGGAGAAACGAAGGTTTTAGCTGCTATTTATGGACCCAAGGCTGGAGTTAAGAAGAATGAAGACCCTGAGAAAGCTTGCATTGAAGTCATTTGGAA GCCCAAAACTGGACAAATTGGGAAGGCGGAAAAAGAGTGTGAGATGATAATGAAGAAGACTTTACAGAGCATTTGTATTTTGACAATCAACCCAAACACC ACAACTTCGATCATAGTTCAGGTTGTCAATGATGATGGTGCTCTTCTACCATGTGCCATAAATGCAGCCTGTGCTGCCCTTGTGGATGCTGGAATTCCCA TGAAGCACCTTGCTGTGGCAATTTGTTGTTGTATTGCAGAAGGCCATTCCGTCGTACTCGACCCCACAAAGTTGGAGGAGCAGAAAATGAGAGGGTTTGC AAATCTGGTATTTCCAAACTCGGGTCAATCGGCTCTACCAGAAGGACCATCTCTCGTGGATGGTGAGCCGTTAGAACATGGGATCATCACCTCTGTCACC CATGGCATTATGTCAGTGGATGAATACTTGAAATGTGTTGAAAGAGGCCGCGCAGCATGCTCGAAGCTGTCTGGTTTCGTCAGGAGGAACTTGCAATCAC AACTTCCCAGTGACTCTTCCAAGGCTGCATAG
AA sequence Show only first row Show all	>Lus10009221 pacid=23160168 polypeptide=Lus10009221 locus=Lus10009221.g ID=Lus10009221.BGIv1.0 annot-version=v1.0 MEIDRNDGRTANQLRPLGCSRSILHRAHGSASWSQGETKVLAAIYGPKAGVKKNEDPEKACIEVIWKPKTGQIGKAEKECEMIMKKTLQSICILTINPNT TTSIIVQVVNDDGALLPCAINAACAALVDAGIPMKHLAVAICCCIAEGHSVVLDPTKLEEQKMRGFANLVFPNSGQSALPEGPSLVDGEPLEHGIITSVT HGIMSVDEYLKCVERGRAACSKLSGFVRRNLQSQLPSDSSKAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46210			Ribosomal protein S5 domain 2-...		Lus10009221 [exp]	0	1
AT3G19590		BUB3.1	BUB \(BUDDING UNINHIBITED BY B...		Lus10023814 [exp]	4.2	0.8937
AT1G10930		ATSGS1, RECQL4A...	DNA helicase (RECQl4A) (.1)		Lus10015467 [exp]	5.3	0.8845
AT1G65650		UCH2	Peptidase C12, ubiquitin carbo...		Lus10031062 [exp]	7.1	0.8829
AT2G43360		BIOB, BIO2	BIOTIN AUXOTROPH B, BIOTIN AUX...		Lus10027018 [exp]	16.7	0.8728
AT3G51870			Mitochondrial substrate carrie...		Lus10004820 [exp]	20.2	0.8518
AT4G23800		3xHMG-box2, AT4...	3xHigh Mobility Group-box2, HM...		Lus10023090 [exp]	24.1	0.8649
AT5G22110		DPB2, CYL2, DBP...	CYCLOPS 2, DNA polymerase epsi...		Lus10026361 [exp]	28.7	0.8611
AT3G15460			Ribosomal RNA processing Brix ...		Lus10002403 [exp]	31.4	0.8694
AT1G09760		U2A'	U2 small nuclear ribonucleopro...		Lus10028659 [exp]	31.7	0.8715
AT4G35930			F-box family protein (.1)		Lus10025956 [exp]	33.8	0.7991

Compare expression of checked genes

Lus10009221 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.