Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60400 61 / 2e-11 F-box/RNI-like superfamily protein (.1) AT1G49610 56 / 9e-10 F-box family protein (.1) AT1G16930 56 / 2e-09 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G02920 55 / 2e-09 F-box/RNI-like superfamily protein (.1) AT5G18770 55 / 3e-09 F-box/FBD-like domains containing protein (.1) AT2G39415 52 / 3e-09 F-box family protein (.1) AT3G28410 55 / 4e-09 F-box/RNI-like superfamily protein (.1) AT5G18780 54 / 5e-09 F-box/RNI-like superfamily protein (.1.2) AT3G18150 53 / 2e-08 RNI-like superfamily protein (.1) AT1G66310 53 / 2e-08 F-box/RNI-like/FBD-like domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009223 [exp] 270 / 1e-93 AT5G18780 59 / 4e-10 F-box/RNI-like superfamily protein (.1.2) Lus10006513 [exp] 92 / 3e-22 AT5G02930 80 / 3e-16 F-box/RNI-like superfamily protein (.1) Lus10038967 [exp] 84 / 4e-19 AT3G18150 77 / 9e-15 RNI-like superfamily protein (.1) Lus10027244 [exp] 83 / 5e-19 AT5G02930 69 / 2e-12 F-box/RNI-like superfamily protein (.1) Lus10020292 [exp] 82 / 1e-18 AT1G60410 76 / 9e-15 F-box family protein (.1) Lus10008295 [exp] 79 / 1e-18 AT1G78840 67 / 2e-13 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10001507 [exp] 81 / 4e-18 AT5G56440 91 / 6e-20 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10006318 [exp] 79 / 2e-17 AT1G69630 74 / 9e-14 F-box/RNI-like superfamily protein (.1) Lus10027258 [exp] 77 / 4e-17 AT4G03220 74 / 9e-15 Protein with RNI-like/FBD-like domains (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G011200 [exp] 84 / 1e-19 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.001G337200 [exp] 71 / 6e-15 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.015G002100 [exp] 68 / 9e-14 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.015G002001 [exp] 57 / 8e-10 AT2G04230 59 / 9e-10 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.011G104100 [exp] 54 / 7e-09 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.001G322900 [exp] 52 / 3e-08 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.011G104300 [exp] 52 / 3e-08 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.011G024300 [exp] 50 / 1e-07 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Potri.011G098700 [exp] 49 / 3e-07 AT1G80960 86 / 6e-18 F-box and Leucine Rich Repeat domains containing protein (.1.2.3) Potri.011G104200 [exp] 48 / 7e-07 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009224 pacid=23160196 polypeptide=Lus10009224 locus=Lus10009224.g ID=Lus10009224.BGIv1.0 annot-version=v1.0 ATGACGATGACAAACCCTAGTAAAAAGATTCGTACGGAGGAAGAAGCCGGGGAAGGGATCGACCGATTGAGCAGTTGTCCTGACCATATTCTTACCCACA TTCTTTCCTTCATGGACGACCCCAAAGCATCGGTACAAACCTCAGTACTCGCTGGAAGGTGGAGACACCTCTGGAAGCATGTTCCTTGTCTTTTTCTTGA CGCGAAATCCTTCACTGCCTCCACTTTCCCCAGGTACATCGACGATGTCTTGTTTAGCCGCCGTGACATCTGCAGCGTTAACGAGCTATGGTTTCTGTCA CATTTCGAACTAGACAAGCCTCTGTTTGATAAGCTCTTGAAATACGTTGCATCTCATGGTCTAGAGAATTTACTACTTGTTGGGAGCTATACTGATGTTC TTGAGGCCGACTCATTTGGCCTAATCAGCAATGAACTGAAGAGCCTACTAGTAAGACGAGCTGCTATTGGTACTGGATTTGGAATCTGTGATTTTAGGAA GTTGACCACTTAG
AA sequence Show only first row Show all	>Lus10009224 pacid=23160196 polypeptide=Lus10009224 locus=Lus10009224.g ID=Lus10009224.BGIv1.0 annot-version=v1.0 MTMTNPSKKIRTEEEAGEGIDRLSSCPDHILTHILSFMDDPKASVQTSVLAGRWRHLWKHVPCLFLDAKSFTASTFPRYIDDVLFSRRDICSVNELWFLS HFELDKPLFDKLLKYVASHGLENLLLVGSYTDVLEADSFGLISNELKSLLVRRAAIGTGFGICDFRKLTT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60400			F-box/RNI-like superfamily pro...		Lus10009224 [exp]	0	1
AT3G07170			Sterile alpha motif (SAM) doma...		Lus10038185 [exp]	4.5	0.8382
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Lus10028521 [exp]	15.5	0.8047
AT2G23380		SET1, SDG1, ICU...	SETDOMAIN 1, SETDOMAIN GROUP 1...		Lus10019336 [exp]	22.0	0.8348
AT1G74600		OTP87	organelle transcript processin...		Lus10024220 [exp]	24.2	0.7459
AT1G77620			P-loop containing nucleoside t...		Lus10035108 [exp]	28.2	0.8147
AT5G60930			P-loop containing nucleoside t...		Lus10000392 [exp]	29.4	0.8249
AT1G22660			Polynucleotide adenylyltransfe...		Lus10026711 [exp]	32.0	0.7707
AT4G25120		ATSRS2	ARABIDOPSIS THALIANA SUPPRESSO...		Lus10016712 [exp]	34.3	0.8117
AT3G04160			unknown protein		Lus10021983 [exp]	35.4	0.7751
AT1G57600			MBOAT (membrane bound O-acyl t...		Lus10007951 [exp]	37.7	0.7681

Compare expression of checked genes

Lus10009224 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.