Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68090 344 / 8e-119 ANN5, ANNAT5 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) AT5G65020 226 / 3e-72 ANNAT2 annexin 2 (.1.2) AT5G10220 225 / 7e-72 ANN6, ANNAT6 ANNEXIN ARABIDOPSIS THALIANA 6, annexin 6 (.1) AT5G10230 223 / 5e-71 ANN7, ANNAT7 annexin 7 (.1) AT5G12380 201 / 8e-63 ANNAT8 annexin 8 (.1) AT1G35720 200 / 2e-62 ATOXY5, ANNAT1 annexin 1 (.1) AT2G38760 180 / 2e-54 ANN3, ANNAT3 annexin 3 (.1) AT2G38750 120 / 2e-31 ANNAT4 annexin 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037992 [exp] 578 / 0 AT1G68090 321 / 6e-110 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Lus10023530 [exp] 548 / 0 AT1G68090 350 / 4e-121 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Lus10040415 [exp] 489 / 2e-176 AT1G68090 306 / 2e-104 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Lus10031942 [exp] 309 / 7e-105 AT1G68090 353 / 2e-122 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Lus10035101 [exp] 308 / 3e-104 AT1G68090 352 / 1e-121 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Lus10008227 [exp] 218 / 5e-69 AT1G35720 476 / 9e-171 annexin 1 (.1) Lus10003611 [exp] 217 / 1e-68 AT1G35720 476 / 1e-170 annexin 1 (.1) Lus10024054 [exp] 208 / 2e-65 AT5G65020 400 / 6e-141 annexin 2 (.1.2) Lus10041696 [exp] 202 / 6e-63 AT5G65020 395 / 2e-138 annexin 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G031800 [exp] 461 / 8e-165 AT1G68090 356 / 3e-123 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Potri.012G041900 [exp] 461 / 1e-164 AT1G68090 358 / 3e-124 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Potri.008G139500 [exp] 328 / 3e-112 AT1G68090 363 / 4e-126 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Potri.010G101800 [exp] 321 / 9e-109 AT1G68090 343 / 3e-117 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Potri.007G092500 [exp] 222 / 1e-70 AT5G65020 488 / 2e-175 annexin 2 (.1.2) Potri.002G095600 [exp] 218 / 3e-69 AT1G35720 481 / 1e-172 annexin 1 (.1) Potri.005G075900 [exp] 212 / 7e-67 AT5G65020 472 / 3e-169 annexin 2 (.1.2) Potri.001G024800 [exp] 207 / 6e-65 AT2G38760 395 / 1e-138 annexin 3 (.1) Potri.003G200700 [exp] 203 / 1e-63 AT5G12380 399 / 3e-140 annexin 8 (.1) Potri.001G277500 [exp] 181 / 1e-54 AT5G12380 442 / 3e-157 annexin 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00191 [flax] [poplar] Annexin Annexin
Representative CDS sequence Show only first row Show all	>Lus10009225 pacid=23160160 polypeptide=Lus10009225 locus=Lus10009225.g ID=Lus10009225.BGIv1.0 annot-version=v1.0 ATGTCGACTTTGAATTTGCCTCCTATGCTTCCTTCTCCTAGAGACGATGCTGTTCTTCTTCATAAAGCTTTCAAAGGTTTCGGGTGCGACACTTCTGCAG TTATAAACATCCTTGCTCATCGAAATGCAGCCCACCGTGCTTACATCCTACACGAGTACAGAACAATGTTCTCCGAGGACATCTTCAAGCGCTTGGCTTC TGAACTTAGTGGCCAGCTGGAGAAGGCAGTTCTTATGTGGATGCAAGATCCTCCAGGATGTGATGCTACTATTGTCAGGAAGGGATTAATGTCTGAAACA ACTAATTTGGATGCTGTAACTGAAGTGATCTGTTCTCGTGCACCATCACAGATACAGTTGATTAAACAACACTATCATGCAAGGTTTGGCGCTTACCTCG AGCATGATATCCAAACTCATACCTCTGGTGATCATAAAAGGATGTTGCTTGCTTATGTAAGCACTCCTCGTCACGAAGGCTGGGAAGTGGACAGAGCAAC AGCTGAAAATGATGCCAAGGCTCTTTACAGAGCAGGGGAGAAGAAGTTGGGAACTGATGAAAATACATTCATCTTCATTTTCAGCTCTCGTAGCGCAGCT CATTTAGCTGCTGTAGATGCTGCTTACGCCAACTTTTACGGACACTCCCTGAAAAAGGCTGTAAAGAGGGAGACATCAGGACAGTTCGAGCGCGCACTAT TGACCATTTTGTTGTGCTCCCAGAATCCTGCCCAGTACTTCGCCAAGGTGCTGCACAAGGCGATGAAGGGTCTGGGTACCAATGACACGGCACTTATACG TGTAATCGTGACAAGGGCTGAGATTGATATGCAATACATAAAAGCTGAGTACCTGAAGAAGTACAGGAAGAGACTTAACGATGCAGTTCACTCCGAAACA TCAGGGAATTACAGGAAGTTCTTGCTTGCTCTTCTGGGACCTGCCGTTTGA
AA sequence Show only first row Show all	>Lus10009225 pacid=23160160 polypeptide=Lus10009225 locus=Lus10009225.g ID=Lus10009225.BGIv1.0 annot-version=v1.0 MSTLNLPPMLPSPRDDAVLLHKAFKGFGCDTSAVINILAHRNAAHRAYILHEYRTMFSEDIFKRLASELSGQLEKAVLMWMQDPPGCDATIVRKGLMSET TNLDAVTEVICSRAPSQIQLIKQHYHARFGAYLEHDIQTHTSGDHKRMLLAYVSTPRHEGWEVDRATAENDAKALYRAGEKKLGTDENTFIFIFSSRSAA HLAAVDAAYANFYGHSLKKAVKRETSGQFERALLTILLCSQNPAQYFAKVLHKAMKGLGTNDTALIRVIVTRAEIDMQYIKAEYLKKYRKRLNDAVHSET SGNYRKFLLALLGPAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Lus10009225 [exp]	0	1
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Lus10037992 [exp]	1.0	0.9215
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Lus10034702 [exp]	3.3	0.8695
AT3G05010			Protein of unknown function, t...		Lus10018985 [exp]	3.5	0.8936
AT2G30990			Protein of unknown function (D...		Lus10017644 [exp]	4.9	0.8794
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10021385 [exp]	5.9	0.8770
AT5G02270		ABCI20, ATNAP9	ARABIDOPSIS THALIANA NON-INTRI...		Lus10010838 [exp]	6.2	0.8989
AT5G47740			Adenine nucleotide alpha hydro...		Lus10002238 [exp]	6.7	0.8661
AT1G67300			Major facilitator superfamily ...		Lus10034930 [exp]	7.7	0.8709
AT5G63030		GRXC1	glutaredoxin C1, Thioredoxin s...		Lus10042104 [exp]	8.9	0.8906
AT3G23360			Protein phosphatase 2C family ...		Lus10021171 [exp]	9.5	0.8674

Compare expression of checked genes

Lus10009225 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.