Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04220 602 / 0 SYT3, NTMCTYPE1.3, ATSYTC ,NTMC2T1.3 ,NTMC2TYPE1.3 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT1G20080 536 / 0 SYT2, NTMCTYPE1.2, ATSYTB ,NTMC2T1.2 ,NTMC2TYPE1.2 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G20990 515 / 9e-180 SYT1, NTMC2TYPE1.1, ATSYTA ,NTMC2T1.1 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) AT1G05500 226 / 4e-67 SYT5, NTMCTYPE2.1, ATSYTE ,NTMC2T2.1 ,NTMC2TYPE2.1 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G21010 210 / 2e-64 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT5G11100 209 / 5e-61 SYT4, NTMCTYPE2.2, ATSYTD ,NTMC2T2.2 ,NTMC2TYPE2.2 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G61050 180 / 1e-50 AtCLB, NTMCTYPE4 ,NTMC2T4 ,NTMC2TYPE4 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT3G60950 101 / 1e-22 C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase (.1) AT2G21040 94 / 2e-21 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G61030 96 / 8e-21 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037993 [exp] 924 / 0 AT5G04220 701 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10040414 [exp] 761 / 0 AT5G04220 667 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10023529 [exp] 593 / 0 AT5G04220 498 / 3e-173 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10026515 [exp] 569 / 0 AT5G04220 615 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10013563 [exp] 565 / 0 AT1G20080 852 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10017268 [exp] 561 / 0 AT1G20080 868 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10019782 [exp] 540 / 0 AT2G20990 825 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Lus10014127 [exp] 540 / 0 AT2G20990 821 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Lus10005069 [exp] 497 / 1e-172 AT2G20990 766 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G038300 [exp] 714 / 0 AT5G04220 629 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.010G223900 [exp] 699 / 0 AT5G04220 598 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.009G134200 [exp] 583 / 0 AT2G20990 850 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Potri.004G174600 [exp] 569 / 0 AT2G20990 854 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Potri.005G241700 [exp] 538 / 0 AT1G20080 816 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.002G019800 [exp] 533 / 0 AT1G20080 846 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.018G124000 [exp] 224 / 2e-66 AT1G05500 877 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.006G063900 [exp] 222 / 1e-65 AT1G05500 847 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.018G025000 [exp] 202 / 3e-58 AT5G11100 824 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.002G150700 [exp] 166 / 1e-45 AT3G61050 624 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Lus10009226 pacid=23160202 polypeptide=Lus10009226 locus=Lus10009226.g ID=Lus10009226.BGIv1.0 annot-version=v1.0 ATGCAGGATCCGGTGGATATATCACTGGTGGAGTTGGATTCTGAGGCCTTGCAGAACATTCTACCTGAGCTTCCACTGTGGGTGAATGCCCTGACTATGA ACGAGTGGGTGGACTGGTTAAACAAGTTTCTCTTGGGCATGTGGCCTTACCTTGATAAGGCCATTTGTGCTATAATTAGAACCACAGCACAGCCAATCTT TGCAGAGTATATTGGGAAATATGGCTTGGAAGCAATTGATTTTGATCATCTCAGTCTTGGAACTCTTCCTCCCACAGTCCATGGTATTAAACTCTATGAC ACCAATGAAAATAATTTAGTCCTGGAAACAGCAGTTAGGTGGGCTGGTAACCCTAATATAACTTTGATGTTAAAGTTTCTGTCTTTGCCAATTACTATTC AGTTGATTGATCTGCAAGTATTTGCAGAGCCAAGGATATCACTGAAGCCTCTTGTGCCTACCTTCCCATGTCTTGCCAACATTGTGGTGTCCTTGATGGA CAGACCTCATGTGGACTTTGGGCTCAAAATCTCAGGTGGAGATGTCATGTCAATACCGGGTCTTTATAGATTTGTTCAGGAAACTATAAAAAAGCAAGTA GCAAGCATGTACCTTTGGCCACATACTCTTGAAATTCCAGTTCTTGATCCTTCAACAGTTGGTGTAAAGAAACCGGTAGGGATACTACATGTGAAAGTCG TCCGGGCGATGAAACTCATGAAAGCTGATATCATTGGAACTTCTGATCCATACATGAAGCTGAGCCTGAGTGGAGAGAATTTACCAGCTAAGAACACCAC AATCAAGAAGCACAATCTAAACCCTATATGGAACGAGCAATTTCGGCTTATTGTTAAAGATCCTGCTTCTCAACTTCTTCAACTTCATGTCATTGACTGG GAGAAGGTAATTAAGCATCTCATATTCATTCAAGTTGTGCCATTGAGAATACTTACACCGCAAGAAACAATGCCACTAACTCTGGACTTGGTTAAGAGCA CCGATGCTGTTGATCCTCACGACAAGAAACAACGAAGGCAGCTCGTGGTGGAGCTAACCCTTGTACCTTTCAAAGAGGACAGTACAATAAGTAGTGACGG AAATGGATATGAGAAGGAGCTATGCTATGATGATTCGTTGAATGGATCGGGTTTGCTTTCGATGACAGTGCAATCAGCAAAAGATGTGGAAGGACAGAAC CATAACAATCCTTATGCTGTAGTGCTTTTCAGAGGAGAAAGCAAAAGAACTAAGATGATTAGAGAAACTCGTGATCCGCGTTGGAACGAGGAGTTTCAGT TCATGACTGATCAGCCTCCTTTACGAGAGAAGATCCATGTCGAGGTTTTGAGCAAAAGAAGAAGGTTCAGTTTCAAATTAAGGGAGTCACTGGGATATGT GGAAGTGAATCTGGATGATGTTGTGTATAATGGAAGGATGAATGAGAAGTATCATCTCATTAATTCAAAGAATGGAGTGATTCATGTTGAGATACGGTGG GATAGAGTGTGA
AA sequence Show only first row Show all	>Lus10009226 pacid=23160202 polypeptide=Lus10009226 locus=Lus10009226.g ID=Lus10009226.BGIv1.0 annot-version=v1.0 MQDPVDISLVELDSEALQNILPELPLWVNALTMNEWVDWLNKFLLGMWPYLDKAICAIIRTTAQPIFAEYIGKYGLEAIDFDHLSLGTLPPTVHGIKLYD TNENNLVLETAVRWAGNPNITLMLKFLSLPITIQLIDLQVFAEPRISLKPLVPTFPCLANIVVSLMDRPHVDFGLKISGGDVMSIPGLYRFVQETIKKQV ASMYLWPHTLEIPVLDPSTVGVKKPVGILHVKVVRAMKLMKADIIGTSDPYMKLSLSGENLPAKNTTIKKHNLNPIWNEQFRLIVKDPASQLLQLHVIDW EKVIKHLIFIQVVPLRILTPQETMPLTLDLVKSTDAVDPHDKKQRRQLVVELTLVPFKEDSTISSDGNGYEKELCYDDSLNGSGLLSMTVQSAKDVEGQN HNNPYAVVLFRGESKRTKMIRETRDPRWNEEFQFMTDQPPLREKIHVEVLSKRRRFSFKLRESLGYVEVNLDDVVYNGRMNEKYHLINSKNGVIHVEIRW DRV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04220		SYT3, NTMCTYPE1...	synaptotagmin 3, Calcium-depen...		Lus10009226 [exp]	0	1
AT1G52820			2-oxoglutarate (2OG) and Fe(II...		Lus10023160 [exp]	2.8	0.9000
AT1G52560			HSP20-like chaperones superfam...		Lus10023653 [exp]	4.0	0.9069
AT3G02230		ATRGP1, RGP1	ARABIDOPSIS THALIANA REVERSIBL...		Lus10034376 [exp]	6.9	0.8711
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10017826 [exp]	6.9	0.8761
AT3G07840			Pectin lyase-like superfamily ...		Lus10043087 [exp]	8.1	0.8462
AT4G39160	MYB		Homeodomain-like superfamily p...		Lus10023544 [exp]	9.1	0.7257
AT1G52560			HSP20-like chaperones superfam...		Lus10024225 [exp]	9.9	0.8761
AT5G10695			unknown protein		Lus10042440 [exp]	10.2	0.8385
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10026623 [exp]	11.0	0.8263
AT4G27670		HSP21	heat shock protein 21 (.1)		Lus10006444 [exp]	12.4	0.8731

Compare expression of checked genes

Lus10009226 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.