Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54810 146 / 2e-40 GATA GATA8, BME3, BME3-ZF GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2) AT1G08010 134 / 4e-36 GATA GATA11 GATA transcription factor 11 (.1.2) AT1G08000 125 / 4e-33 GATA GATA10 GATA transcription factor 10 (.1.2) AT4G32890 123 / 4e-32 GATA GATA9 GATA transcription factor 9 (.1) AT5G25830 122 / 1e-31 GATA GATA12 GATA transcription factor 12 (.1) AT3G24050 120 / 2e-31 GATA GATA1 GATA transcription factor 1 (.1) AT5G66320 121 / 4e-31 GATA GATA5 GATA transcription factor 5 (.1.2) AT2G45050 119 / 4e-31 GATA GATA2 GATA transcription factor 2 (.1) AT3G60530 118 / 8e-31 GATA GATA4 GATA transcription factor 4 (.1) AT4G36240 117 / 2e-30 GATA GATA7 GATA transcription factor 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037994 [exp] 479 / 2e-169 AT3G54810 160 / 6e-46 GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2) Lus10011430 [exp] 129 / 3e-34 AT4G32890 237 / 9e-77 GATA transcription factor 9 (.1) Lus10037572 [exp] 129 / 4e-34 AT4G32890 236 / 2e-76 GATA transcription factor 9 (.1) Lus10021466 [exp] 126 / 1e-33 AT1G08010 157 / 2e-46 GATA transcription factor 11 (.1.2) Lus10016092 [exp] 125 / 1e-33 AT1G08010 159 / 2e-47 GATA transcription factor 11 (.1.2) Lus10028178 [exp] 125 / 4e-33 AT2G45050 204 / 3e-65 GATA transcription factor 2 (.1) Lus10037398 [exp] 124 / 9e-33 AT1G08010 169 / 1e-50 GATA transcription factor 11 (.1.2) Lus10031096 [exp] 118 / 3e-32 AT5G66320 137 / 1e-40 GATA transcription factor 5 (.1.2) Lus10023684 [exp] 120 / 5e-32 AT3G24050 168 / 3e-52 GATA transcription factor 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G223300 [exp] 253 / 3e-81 AT3G54810 148 / 8e-42 GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2) Potri.008G038900 [exp] 247 / 4e-79 AT3G54810 150 / 1e-42 GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2) Potri.004G211800 [exp] 130 / 9e-35 AT1G08010 150 / 4e-43 GATA transcription factor 11 (.1.2) Potri.014G058600 [exp] 122 / 2e-32 AT3G60530 189 / 7e-60 GATA transcription factor 4 (.1) Potri.018G044900 [exp] 125 / 3e-32 AT5G25830 247 / 2e-79 GATA transcription factor 12 (.1) Potri.001G188500 [exp] 123 / 3e-32 AT4G32890 201 / 7e-63 GATA transcription factor 9 (.1) Potri.002G142800 [exp] 122 / 3e-32 AT3G60530 189 / 1e-59 GATA transcription factor 4 (.1) Potri.006G237700 [exp] 124 / 4e-32 AT5G25830 246 / 2e-79 GATA transcription factor 12 (.1) Potri.013G059600 [exp] 123 / 4e-32 AT5G25830 128 / 1e-34 GATA transcription factor 12 (.1) Potri.003G174800 [exp] 122 / 4e-32 AT3G24050 167 / 6e-51 GATA transcription factor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF00320 [flax] [poplar] GATA GATA zinc finger
Representative CDS sequence Show only first row Show all	>Lus10009227 pacid=23160177 polypeptide=Lus10009227 locus=Lus10009227.g ID=Lus10009227.BGIv1.0 annot-version=v1.0 ATGGTTGGACAGACAACATCATCATCATCCTTGAATTTCATGGAAGAGCTCGACTTCTTTGACCAAATGGACGACCTCATCGACTTCCCCTCCGACGACA TCGACGCCATTCTTTCCTGCCCCAGCGGCGACGCCGTCAAACCCAATTTCTTCTCCGCCGCCGACAACAAAACCGAGGATGACGGTACCGGCTCATTCCT TCCGCCCAGCATTTGGGCCGCTCACCCAGGTTCCGACCCGGGTTTCCCCAACCACAGCGCCTCCGACCTCTCGGCTGAGCTGTCCGTTCCGTACGAGGAC ATAGTTCAGCTGGAATGGCTATCAACTTTTGTGGAGGATTCCTTCTCTGGAGGAAGCCTCACCATGAACAAGAACGAGTGTTCTTCGTTCCTGGACAAGG ACTTGTCATCCTCGTCGTCCCATGGTCAACACTTTCGTACCTCGAGCCCTGTGTCGGTCCTTGAGAGCAGCAGCTCCTGCTCTGGCGACCAGAAGGGAGC GGTGGTCATTGACGTGGGTGCGGGGAAATGTGGGAGAGCTCGTAGCAAGCGACCTAGACCGGCTACCTTCACTCCCCGACCACCAATGCAGCATCTTATC TCCCCAACCTCATCGATTACCGAGACCATAACCCCCCATGGAGTGTGCCTTGCTCCCAAGGCTCATTCTGATTCGGAGAACTATGCTGAGTCGCGCCTAC TCATCAAGATCCCCACGCATCTCCTCTCGGAACATAAGGCCGAACCCAAGAAGAAGAAGAAGAAGGTCAAGGTGACTGCTCCTACCCCACCTGCTCCTGC TCTTGAGGAGGAAAGCAACAATTCGGAGGAACAGCAACAGCAGCAGCAGCAGGCAGTGAGGAAATGTATGCATTGTGAGGTGACAAAGACACCACAGTGG AGGGCAGGGCCAATGGGGCCAAAGACTCTGTGCAATGCTTGTGGAGTGAGGTTCAAGTCTGGCCGCCTTTTTCCTGAATATCGTCCTGCTGCAAGTCCCA CCTTTGTTCCAACCCTGCATTCCAATTCTCACAAGAAGGTGGTTGAGATGAGAACCAAGGTGGTTGGTGATGAAATGTTTGGCGGCATTGATGATGGCTC TCTGATTCCGGAATCACCGGAGCTGCTCATTCCCGGCGATAATCTTGCCTTGGAAGAATACATGTGA
AA sequence Show only first row Show all	>Lus10009227 pacid=23160177 polypeptide=Lus10009227 locus=Lus10009227.g ID=Lus10009227.BGIv1.0 annot-version=v1.0 MVGQTTSSSSLNFMEELDFFDQMDDLIDFPSDDIDAILSCPSGDAVKPNFFSAADNKTEDDGTGSFLPPSIWAAHPGSDPGFPNHSASDLSAELSVPYED IVQLEWLSTFVEDSFSGGSLTMNKNECSSFLDKDLSSSSSHGQHFRTSSPVSVLESSSSCSGDQKGAVVIDVGAGKCGRARSKRPRPATFTPRPPMQHLI SPTSSITETITPHGVCLAPKAHSDSENYAESRLLIKIPTHLLSEHKAEPKKKKKKVKVTAPTPPAPALEEESNNSEEQQQQQQQAVRKCMHCEVTKTPQW RAGPMGPKTLCNACGVRFKSGRLFPEYRPAASPTFVPTLHSNSHKKVVEMRTKVVGDEMFGGIDDGSLIPESPELLIPGDNLALEEYM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54810	GATA	GATA8, BME3, BM...	GATA TRANSCRIPTION FACTOR 8, B...		Lus10009227 [exp]	0	1
AT3G54810	GATA	GATA8, BME3, BM...	GATA TRANSCRIPTION FACTOR 8, B...		Lus10037994 [exp]	1.0	0.9281
AT5G26670			Pectinacetylesterase family pr...		Lus10010084 [exp]	1.4	0.8713
AT3G62270			HCO3- transporter family (.1)		Lus10032651 [exp]	2.8	0.8324
AT1G04990	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10029988 [exp]	3.5	0.8200
AT5G20680		TBL16	TRICHOME BIREFRINGENCE-LIKE 16...		Lus10027651 [exp]	4.2	0.8386
AT2G17230		EXL5	EXORDIUM like 5 (.1)		Lus10026548 [exp]	5.0	0.8249
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10034687 [exp]	6.7	0.7899
AT2G43180			Phosphoenolpyruvate carboxylas...		Lus10025529 [exp]	7.9	0.7985
					Lus10006920 [exp]	8.9	0.7800
AT5G08200			peptidoglycan-binding LysM dom...		Lus10040979 [exp]	8.9	0.8046

Compare expression of checked genes

Lus10009227 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.