Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47840 296 / 5e-101 AMK2 adenosine monophosphate kinase (.1) AT5G35170 217 / 8e-67 adenylate kinase family protein (.1.2) AT5G26667 106 / 8e-28 PYR6 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT5G63400 106 / 1e-27 ADK1 adenylate kinase 1 (.1.2) AT4G25280 101 / 1e-25 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G50370 100 / 4e-25 Adenylate kinase family protein (.1) AT2G37250 94 / 2e-22 ADK, ATPADK1 adenosine kinase (.1) AT3G60180 91 / 3e-22 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G39270 89 / 2e-20 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G01820 48 / 2e-06 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037995 [exp] 303 / 4e-105 AT5G47840 315 / 9e-110 adenosine monophosphate kinase (.1) Lus10003504 [exp] 296 / 1e-101 AT5G47840 300 / 1e-102 adenosine monophosphate kinase (.1) Lus10009478 [exp] 259 / 5e-88 AT5G47840 293 / 1e-101 adenosine monophosphate kinase (.1) Lus10036326 [exp] 216 / 9e-67 AT5G35170 658 / 0.0 adenylate kinase family protein (.1.2) Lus10022453 [exp] 108 / 3e-28 AT5G63400 411 / 2e-147 adenylate kinase 1 (.1.2) Lus10016757 [exp] 107 / 6e-28 AT5G63400 416 / 2e-149 adenylate kinase 1 (.1.2) Lus10031611 [exp] 97 / 5e-24 AT5G26667 343 / 1e-121 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10023476 [exp] 99 / 6e-24 AT2G37250 407 / 2e-144 adenosine kinase (.1) Lus10040358 [exp] 97 / 1e-23 AT2G37250 405 / 1e-143 adenosine kinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G103400 [exp] 310 / 4e-106 AT5G47840 347 / 1e-120 adenosine monophosphate kinase (.1) Potri.019G078200 [exp] 305 / 2e-104 AT5G47840 332 / 8e-115 adenosine monophosphate kinase (.1) Potri.018G113400 [exp] 223 / 1e-68 AT5G35170 838 / 0.0 adenylate kinase family protein (.1.2) Potri.006G189201 [exp] 125 / 3e-36 AT5G35170 158 / 1e-46 adenylate kinase family protein (.1.2) Potri.012G095300 [exp] 107 / 5e-28 AT5G63400 419 / 1e-150 adenylate kinase 1 (.1.2) Potri.015G092800 [exp] 104 / 1e-26 AT5G63400 425 / 6e-153 adenylate kinase 1 (.1.2) Potri.015G129000 [exp] 100 / 5e-25 AT4G25280 301 / 6e-104 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G134600 [exp] 97 / 3e-24 AT5G26667 345 / 1e-122 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.014G043300 [exp] 96 / 6e-24 AT5G26667 358 / 2e-127 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.014G104700 [exp] 93 / 9e-23 AT5G26667 275 / 8e-95 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00406 [flax] [poplar] ADK Adenylate kinase
Representative CDS sequence Show only first row Show all	>Lus10009228 pacid=23160158 polypeptide=Lus10009228 locus=Lus10009228.g ID=Lus10009228.BGIv1.0 annot-version=v1.0 ATGAACAAAGTGCTTTTTAGATCGCCGCTCGATCAGCTCCACGTTGTTGTAGCTTCAGCTATGGCGGACCCGCCTCTTAGAATCATGATTTCAGGTGCTC CTGCATCTGGTAAAGGTACCCAGTGTGAGTTCATTACTAAAAAGTACAGCTTGGTGCACATTGCCGCTGGAGATCTGCTTCGTGCTGAAATTTCTTTCGG AAGTGAGAATGGTAAGCAGGCAAAAGAATACATGGAGAAAGGTCAGCTGGTCCCAGATGAAATAGTTGTGATGATGGTGAAGGATCGGTTGATGCAGCCT GACTCGCAAGAAAATGGCTGGCTATTTGATGGATATCCACGGAGCTCGTCTCAAGCTACTGCTCTCAAGGGATATGGCTTTGAACCTGATATTTTCATCG TCTTACAAGTCCCTGAAGAGATTCTTGTTGAAAGAGTTGTTGGACGTAGACTGGACCCTACTGAAGAAATAGCTGCTAGACTAACCCAACGTTTTGATGA TACTGAAGATAAGGTGAAGTTGAGGCTCAACACTCATAACCAGAATGTGGAGGCAGTGCTCTCAATGTATGAAAACATTACTCTGAAGGCATGTTATCTC TCTCGCTCGCTTGCTCGCTCTCGATTGTTTATTTGTAGTTGTTCATGCTTCCGAATTGTTGTTTCTAGTTGTTACAGCTGGTCGATTGACGCCCTCCAGC TGCATCATAACTTTTACATGCATTTTCCTCTAGCTAGCCAGTTATCTTGGACTTCTTGCCCTGCCTTTTCTACGGTGGAGGTTAGACTTCGATTAGACTC ATAA
AA sequence Show only first row Show all	>Lus10009228 pacid=23160158 polypeptide=Lus10009228 locus=Lus10009228.g ID=Lus10009228.BGIv1.0 annot-version=v1.0 MNKVLFRSPLDQLHVVVASAMADPPLRIMISGAPASGKGTQCEFITKKYSLVHIAAGDLLRAEISFGSENGKQAKEYMEKGQLVPDEIVVMMVKDRLMQP DSQENGWLFDGYPRSSSQATALKGYGFEPDIFIVLQVPEEILVERVVGRRLDPTEEIAARLTQRFDDTEDKVKLRLNTHNQNVEAVLSMYENITLKACYL SRSLARSRLFICSCSCFRIVVSSCYSWSIDALQLHHNFYMHFPLASQLSWTSCPAFSTVEVRLRLDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47840		AMK2	adenosine monophosphate kinase...		Lus10009228 [exp]	0	1
AT3G44820			Phototropic-responsive NPH3 fa...		Lus10019522 [exp]	4.0	0.8409
					Lus10041155 [exp]	6.9	0.7860
AT3G03940			Protein kinase family protein ...		Lus10023628 [exp]	8.7	0.7849
AT4G18490			unknown protein		Lus10021779 [exp]	12.2	0.8144
AT2G12400			unknown protein		Lus10008028 [exp]	12.3	0.8458
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Lus10029757 [exp]	18.1	0.8090
AT1G19835			Plant protein of unknown funct...		Lus10032386 [exp]	18.4	0.7949
AT5G38900			Thioredoxin superfamily protei...		Lus10034368 [exp]	18.7	0.8090
AT1G21240		WAK3	wall associated kinase 3 (.1)		Lus10013387 [exp]	19.7	0.8307
					Lus10009048 [exp]	20.4	0.7996

Compare expression of checked genes

Lus10009228 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.