Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39000 320 / 4e-112 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) AT4G28030 45 / 9e-06 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) AT5G16800 45 / 1e-05 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) AT3G02980 44 / 3e-05 MCC1 MEIOTIC CONTROL OF CROSSOVERS1 (.1) AT2G38130 42 / 8e-05 ATMAK3 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037996 [exp] 435 / 4e-156 AT2G39000 335 / 2e-115 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Lus10023517 [exp] 366 / 2e-129 AT2G39000 388 / 4e-137 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Lus10040401 [exp] 362 / 5e-128 AT2G39000 386 / 3e-136 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Lus10019975 [exp] 48 / 2e-06 AT4G28030 322 / 3e-111 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Lus10041016 [exp] 45 / 2e-05 AT5G16800 334 / 1e-116 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Lus10013457 [exp] 44 / 3e-05 AT5G16800 337 / 1e-117 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Lus10021995 [exp] 42 / 0.0002 AT1G72030 181 / 4e-56 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10042534 [exp] 41 / 0.0004 AT1G72030 179 / 3e-55 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10041514 [exp] 39 / 0.001 AT2G38130 287 / 3e-100 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G039300 [exp] 353 / 7e-124 AT2G39000 387 / 1e-135 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Potri.010G222900 [exp] 338 / 1e-118 AT2G39000 370 / 5e-130 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Potri.013G079900 [exp] 48 / 2e-06 AT5G16800 346 / 3e-121 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Potri.006G176500 [exp] 45 / 1e-05 AT4G28030 284 / 2e-96 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Potri.019G050700 [exp] 45 / 1e-05 AT5G16800 334 / 2e-116 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Potri.005G054600 [exp] 44 / 3e-05 AT1G72030 216 / 1e-69 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.011G139300 [exp] 40 / 0.0004 AT2G38130 294 / 1e-102 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Potri.001G429200 [exp] 40 / 0.0006 AT2G38130 299 / 6e-105 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Potri.001G435300 [exp] 40 / 0.0006 AT2G38130 299 / 6e-105 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Potri.001G432400 [exp] 39 / 0.0007 AT2G38130 296 / 4e-104 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0257 [flax] [poplar] Acetyltrans PF00583 [flax] [poplar] Acetyltransf_1 Acetyltransferase (GNAT) family
Representative CDS sequence Show only first row Show all	>Lus10009229 pacid=23160192 polypeptide=Lus10009229 locus=Lus10009229.g ID=Lus10009229.BGIv1.0 annot-version=v1.0 ATGGCGGAGTTGTTCCCATCATTGTCTCCAGAGATAGTGGTGAGAGAGGCTAGGATGGAGGACTTTTGGGAAGTGGCCGAGACTCATTGCAGCTCTTTCT TCCCGAGATACGCATTCCCGCTTGATATTACTCTGAGACTGAATAGGCTAGTGGGGATGCTAGTTGGGTACTCTGTACCATCTGGTTGCAAGAGAATTTG TCTGGTTGCTATTGTCGTTGATCAATCTTTTTACATTGGTAACGAGGGTATCAAGATTGGAGGATTTGATGCCAAGTTTACCATGAACAAGGGACATGTT GCTGGGATACTGACCCTTGATACTGTAGCCAATTTCCTCCCGAGAAAAGGTCCACAAAAGCAAAGAAGGACTGGGATCGCATACATATCAAATGTAGCTG TGCGTGAAAGATTTCGACGCAAGGGGATAGCTAAACAACTTGTTGTAAAGGCAGAGACATTGGCAAAAACTTGGGGGTGCCGCGCCATTGCTCTTCACTG CGAGCTGCAGAATCCAGGTGCCACCCGACTGTACAGAGGGCAAGGTTTCAAGTGCATCAGGGTGCCCGACGGTGCAAACTGGCCTCATCCCAGAATCTCT CCAGATGTTAAATTTAACTTCATGATGAAGCTTCTAAAACCCACAGCATCAACCATTATCACTTAG
AA sequence Show only first row Show all	>Lus10009229 pacid=23160192 polypeptide=Lus10009229 locus=Lus10009229.g ID=Lus10009229.BGIv1.0 annot-version=v1.0 MAELFPSLSPEIVVREARMEDFWEVAETHCSSFFPRYAFPLDITLRLNRLVGMLVGYSVPSGCKRICLVAIVVDQSFYIGNEGIKIGGFDAKFTMNKGHV AGILTLDTVANFLPRKGPQKQRRTGIAYISNVAVRERFRRKGIAKQLVVKAETLAKTWGCRAIALHCELQNPGATRLYRGQGFKCIRVPDGANWPHPRIS PDVKFNFMMKLLKPTASTIIT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39000			Acyl-CoA N-acyltransferases (N...		Lus10009229 [exp]	0	1
AT5G47240		ATNUDT8	nudix hydrolase homolog 8 (.1)		Lus10040169 [exp]	2.0	0.9240
AT1G51110			Plastid-lipid associated prote...		Lus10010444 [exp]	6.2	0.9258
AT2G04700			ferredoxin thioredoxin reducta...		Lus10039468 [exp]	7.2	0.9231
AT4G34090			unknown protein		Lus10041575 [exp]	8.4	0.9080
AT1G31170		ATSRX	sulfiredoxin (.1.2.3.4)		Lus10036218 [exp]	8.9	0.8925
AT2G30390		FC2, FC-II, ATF...	ferrochelatase 2 (.1.2)		Lus10019224 [exp]	10.2	0.9010
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Lus10033720 [exp]	10.4	0.9012
AT4G22890		PGR5-LIKEA, PGR...	PGR5-LIKE A (.1.2.3.4.5)		Lus10006710 [exp]	11.0	0.9236
AT4G40070			RING/U-box superfamily protein...		Lus10034157 [exp]	14.3	0.8967
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10001560 [exp]	15.2	0.8922

Compare expression of checked genes

Lus10009229 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.