Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20660 1118 / 0 Zn-dependent exopeptidases superfamily protein (.1.2) AT1G67420 184 / 1e-47 Zn-dependent exopeptidases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037997 [exp] 1699 / 0 AT5G20660 1157 / 0.0 Zn-dependent exopeptidases superfamily protein (.1.2) Lus10037015 [exp] 183 / 2e-47 AT1G67420 1104 / 0.0 Zn-dependent exopeptidases superfamily protein (.1.2) Lus10015792 [exp] 130 / 9e-31 AT1G67420 511 / 2e-168 Zn-dependent exopeptidases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G039400 [exp] 1284 / 0 AT5G20660 1083 / 0.0 Zn-dependent exopeptidases superfamily protein (.1.2) Potri.008G175400 [exp] 189 / 1e-49 AT1G67420 1062 / 0.0 Zn-dependent exopeptidases superfamily protein (.1.2) Potri.010G060500 [exp] 181 / 7e-47 AT1G67420 1085 / 0.0 Zn-dependent exopeptidases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0035 [flax] [poplar] Peptidase_MH PF04389 [flax] [poplar] Peptidase_M28 Peptidase family M28
Representative CDS sequence Show only first row Show all	>Lus10009230 pacid=23160159 polypeptide=Lus10009230 locus=Lus10009230.g ID=Lus10009230.BGIv1.0 annot-version=v1.0 ATGCGTAAGCGTGCGGGAAATTCATCGGCGAGATCCAAGTCCTCGCCGAATGGCAAGCCACCGACCACAGGCGATGACTGCGTACAAAGTAGCAACAGCG TCGGCTCTGGCACGCTGCTTACTGCTCGGAGGTCGGCCTCAGTGTGGCTGATCATGTTCGTTGCATTAATCTACTCGTCTTGGTGGGTTTACAGTTACCA ATACGATAGCTTGCCTCCGCCTCTCTCTGCTGAGCAAGCCGGGAAAAGAGGCTTCTCCGAGGTGGAAGCGATGAAGCACGTCGAGTCATTGACTCAATTT GGACCTCATCCCATTGGCTCCGATGCGCTTGATCGTGCTCTCCAGTATGTTATGGCAACTGCAGAAGCAATTAAGAAAACTGCTCACTGGGAAGTTGACG TTGAAGTGGACCTTTTCCATGCAAAATCTGGTGCAAACCGCTTGGTCAGTGGCCTCTTTGTAGGGAAGACACTTGTGTATTCTGATCTTACGCACGTTGT ATTACGAATCTCGCCAAAATATTCTTCTGAAGCTGAAGATAATGCTATTCTCGTCTCCTCTCACATTGATACCGTATTCTCAACAGAAGGTGCTGGAGAT TGCAGTTCATGTGTAGCTGTGATGTTGGAACTTGCCAGGGGGATTTCTCAAAGGGCTCATGGATTCAAGAATTCTGTAATATTCTTATTTAACACAGGTG AGGAAGAAGGTCTGAGTGGCGCGCACAGCTTCATAACACAGCACCCATGGAGTAGTACTATAAAGATGGCTATTGATTTAGAGGCCATGGGTATTGGAGG AAAGTCGAGCATTTTTCAGGCTGGGCCTAATCCCTGGGCAATTGAAATTTTTGCATCAGCAGCAAAATACCCTTCCGCCAATATTATAGCACAGGATCTT TTTGCTTCCGGAATAATTAAATCTGCTACAGATTTCCAAGTATACAAGGAGGTTACTGGCCTATCAGGGCTTGACTTTGCCTACACTGATAACAGTGCTG TCTATCATACTAAGAACGACAAATTAGAGCTATTGAAGCGTGGATCTCTTCAGCATCTTGGAGAAAACATGCTGGCTTTTCTGGTCCAGATTGTCTCATC TTCTGATATTCCAAAGGCTAAAACAATTACAGAAGATGAGAACACTAGCACTGAGAGTGCTGTATTTTTTGACATTTTGGGGTCCTATATGGTAGTGTAT AAGCAACGGTTTGCAAGCATGATTCAAAATTCAGTGATAATGCAGTCACTTCTAATTTGGACAACTTCATTACTAATGGGGGGTTATCCGGCTGTGATTT CATTTGGATTGTCTTGTCTGAGTGCTGTGCTTATGTGGATTTTCTCGATAGGGTTTTCATTTGTAGTGGCCTTCATTCTGCCCCAAATAGCTTCCTCGCC TGTGCCATATGTTGCTAATCCATGGTTGGTAATTGGCTTATTCGCTGCTCCTGCTCTACTTGGGGCAGCGACTGGCCAACATTTAGGTTATCTAATCCTG AGAACACATTTATCAAATGTCCACTCCAAGAGGAAGCAACAATCACCTGCTATCCAAGCTGAACGAGTCAAGTTAGAGTCTGAGAGATGGGTGTTTAAAG CTGGTTTCATTCAATGGCTTGTATTACTAGCTATCGGAAACTACTTCAAAGTTGGATCATCCTATCTAGCCCTTTTCTGGCTAGTTCCTCCAGCATTTTC ATATGGCCTGCTTGAGGCGACTTTGACTCCAGCTCGGACACCAAGGCCACTCAAACTTGCAACACTGCTGATAGGGTTGGCTATACCAGTTTTGATTTCT GCGGGAGTTTTTGTTCGCTTTGCTGGTACAGTAATTGGCCTTGTTGTCCGGTTTGATAGGAGCCCCGGTAGCACTCCTGAGTGGTTGGCAAGCGCGATAG TCTCTGCTTACATTGCCATCGTCACATGCCTGACCCTCGTCTACATCCTTTCATATATTCATATTTCAGGGGTTGCTAAAAGGTTAATTTTCCTTGTTAT TACTTTGATCTTCGGTGTTTCACTTGCTCTTGTATTATCCGGTGTAACACCACCCTTCACCAAGGACACTGCTCGAGCCGTTAATGTGGTACATGTCGTG GATACAATGTCACGTGAGGGGGGAAAGCAAGATCCTGTTTCATATGTTTCTCTATTTTCCATAACTCCTGGAAAGCTGGCGAAAGAAGTTGAAGAAATCG ACGAGGGATTTGTATGCGGAAGAGACAAGGTTGTTGATTTCGTTACGTTCTCGGTGAAATATGGCTGCGTGGCACATAATGATGAAAGCAGACTTGGGTG GAGTGATTCTGATGTTTCAGAACTGCATGTCGATAGTGATACCAAGGGGAAAGAAGGAAGAAGTACTCAAGTCTCCTTCAATACAAAAGCTTCGACACGG TGGTCGCTTGCCATAAATAGTGAAGAAATACAAGATTTCATTCTTAAAGTTAACTCAGAGGAATTAGTACCATTGGGAGACAAGAGCACCGCAGATGGAT GGCATATCATTCAGTTTGCAGGAGGGAGGGAGTCACCAAGACAGTTCGAACTCACTCTCTTCTGGCAAAAGCAACCGTCTCAGGAATCGACGGAGAAGGA GGGAGAGGCAAGGCCTCTACTGAAGTTAAGAACAGATGTTCAGCGAGTAACTCCAATAGCAGAAAGGGTTATTTCCAAGCTCCCACAGTGGTGTTCGCAA TTTGGGAAGTCCTCTTCTCCATACAATCTAGCTTTCTTGACAAGTCTCCCCGTCCACTTTTAG
AA sequence Show only first row Show all	>Lus10009230 pacid=23160159 polypeptide=Lus10009230 locus=Lus10009230.g ID=Lus10009230.BGIv1.0 annot-version=v1.0 MRKRAGNSSARSKSSPNGKPPTTGDDCVQSSNSVGSGTLLTARRSASVWLIMFVALIYSSWWVYSYQYDSLPPPLSAEQAGKRGFSEVEAMKHVESLTQF GPHPIGSDALDRALQYVMATAEAIKKTAHWEVDVEVDLFHAKSGANRLVSGLFVGKTLVYSDLTHVVLRISPKYSSEAEDNAILVSSHIDTVFSTEGAGD CSSCVAVMLELARGISQRAHGFKNSVIFLFNTGEEEGLSGAHSFITQHPWSSTIKMAIDLEAMGIGGKSSIFQAGPNPWAIEIFASAAKYPSANIIAQDL FASGIIKSATDFQVYKEVTGLSGLDFAYTDNSAVYHTKNDKLELLKRGSLQHLGENMLAFLVQIVSSSDIPKAKTITEDENTSTESAVFFDILGSYMVVY KQRFASMIQNSVIMQSLLIWTTSLLMGGYPAVISFGLSCLSAVLMWIFSIGFSFVVAFILPQIASSPVPYVANPWLVIGLFAAPALLGAATGQHLGYLIL RTHLSNVHSKRKQQSPAIQAERVKLESERWVFKAGFIQWLVLLAIGNYFKVGSSYLALFWLVPPAFSYGLLEATLTPARTPRPLKLATLLIGLAIPVLIS AGVFVRFAGTVIGLVVRFDRSPGSTPEWLASAIVSAYIAIVTCLTLVYILSYIHISGVAKRLIFLVITLIFGVSLALVLSGVTPPFTKDTARAVNVVHVV DTMSREGGKQDPVSYVSLFSITPGKLAKEVEEIDEGFVCGRDKVVDFVTFSVKYGCVAHNDESRLGWSDSDVSELHVDSDTKGKEGRSTQVSFNTKASTR WSLAINSEEIQDFILKVNSEELVPLGDKSTADGWHIIQFAGGRESPRQFELTLFWQKQPSQESTEKEGEARPLLKLRTDVQRVTPIAERVISKLPQWCSQ FGKSSSPYNLAFLTSLPVHF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20660			Zn-dependent exopeptidases sup...		Lus10009230 [exp]	0	1
AT3G19420		PTEN2A, ATPEN2	phosphatase and TENsin homolog...		Lus10002826 [exp]	4.8	0.9111
AT5G54730		ATATG18F	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10035835 [exp]	9.6	0.9074
AT1G22620		ATSAC1	suppressor of actin 1, Phospho...		Lus10014827 [exp]	14.2	0.9044
AT1G28690			Tetratricopeptide repeat (TPR)...		Lus10025420 [exp]	14.4	0.8915
AT2G44950		RDO4, HUB1	REDUCED DORMANCY 4, histone mo...		Lus10028187 [exp]	14.5	0.8910
AT4G23980	ARF	ARF9	auxin response factor 9 (.1.2)		Lus10032413 [exp]	15.2	0.8314
AT2G01690			ARM repeat superfamily protein...		Lus10003702 [exp]	15.2	0.8665
AT4G02120			CTP synthase family protein (....		Lus10025043 [exp]	16.1	0.8795
AT5G62600		MOS14	modifier of snc1-1, 14, ARM re...		Lus10004250 [exp]	17.0	0.8778
AT5G05980		ATDFB, FPGS1	folylpolyglutamate synthetase ...		Lus10004694 [exp]	18.1	0.8663

Compare expression of checked genes

Lus10009230 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.