Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45510 635 / 0 CYP704A2 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) AT2G44890 610 / 0 CYP704A1 "cytochrome P450, family 704, subfamily A, polypeptide 1", cytochrome P450, family 704, subfamily A, polypeptide 1 (.1.2) AT1G69500 390 / 3e-125 CYP704B1 "cytochrome P450, family 704, subfamily B, polypeptide 1", cytochrome P450, family 704, subfamily B, polypeptide 1 (.1) AT5G08250 340 / 6e-107 Cytochrome P450 superfamily protein (.1) AT5G23190 340 / 5e-106 CYP86B1 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) AT3G56630 326 / 3e-101 CYP94D2 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) AT1G34540 317 / 4e-98 CYP94D1 "cytochrome P450, family 94, subfamily D, polypeptide 1", cytochrome P450, family 94, subfamily D, polypeptide 1 (.1) AT1G01600 303 / 6e-92 CYP86A4 "cytochrome P450, family 86, subfamily A, polypeptide 4", cytochrome P450, family 86, subfamily A, polypeptide 4 (.1) AT4G00360 301 / 2e-91 ATT1, CYP86A2 "cytochrome P450, family 86, subfamily A, polypeptide 2", ABERRANT INDUCTION OF TYPE THREE 1, cytochrome P450, family 86, subfamily A, polypeptide 2 (.1) AT2G45970 300 / 4e-91 CYP86A8, LCR LACERATA, "cytochrome P450, family 86, subfamily A, polypeptide 8", cytochrome P450, family 86, subfamily A, polypeptide 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037999 [exp] 818 / 0 AT2G45510 539 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Lus10015018 [exp] 563 / 0 AT2G45510 586 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Lus10038896 [exp] 555 / 0 AT2G45510 582 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Lus10036772 [exp] 408 / 5e-132 AT1G69500 863 / 0.0 "cytochrome P450, family 704, subfamily B, polypeptide 1", cytochrome P450, family 704, subfamily B, polypeptide 1 (.1) Lus10037157 [exp] 407 / 8e-132 AT1G69500 868 / 0.0 "cytochrome P450, family 704, subfamily B, polypeptide 1", cytochrome P450, family 704, subfamily B, polypeptide 1 (.1) Lus10017394 [exp] 316 / 1e-96 AT5G23190 739 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10010193 [exp] 315 / 2e-96 AT5G23190 741 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10040986 [exp] 313 / 2e-95 AT5G23190 751 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10032278 [exp] 307 / 3e-93 AT1G63710 792 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G072000 [exp] 726 / 0 AT2G45510 706 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Potri.014G072100 [exp] 676 / 0 AT2G45510 563 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Potri.014G072300 [exp] 646 / 0 AT2G45510 563 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Potri.012G131200 [exp] 530 / 4e-179 AT2G44890 511 / 7e-178 "cytochrome P450, family 704, subfamily A, polypeptide 1", cytochrome P450, family 704, subfamily A, polypeptide 1 (.1.2) Potri.008G088900 [exp] 404 / 1e-130 AT1G69500 868 / 0.0 "cytochrome P450, family 704, subfamily B, polypeptide 1", cytochrome P450, family 704, subfamily B, polypeptide 1 (.1) Potri.005G092200 [exp] 334 / 3e-103 AT5G23190 788 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.007G072100 [exp] 330 / 4e-102 AT5G23190 799 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.016G031700 [exp] 325 / 8e-101 AT3G56630 629 / 0.0 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) Potri.006G033600 [exp] 306 / 7e-94 AT3G56630 576 / 0.0 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) Potri.003G129100 [exp] 299 / 1e-90 AT1G63710 823 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10009232 pacid=23160179 polypeptide=Lus10009232 locus=Lus10009232.g ID=Lus10009232.BGIv1.0 annot-version=v1.0 ATGGACGGCATAATCATCATCATTCTCTTAACAATCCTCTGCTTCACATCATCAATTATCCTCTTCATATCCTACCACATACTCAAATGCTACGCCACCG GAATAAAGTCAATCAACAGCCCAAACCACCCGCCGGTCAAAGGCACGGTGTTCCACCAGATGCTCTACTTCACCAAGCTCTACGACCACCACACGGAGAT CGCCAGAACCCACCGGACTTTCCGGCTGCTAGCTCCTGACTCCAGCAGCATTTACACAACCGACCCGAGGAACGTGGAGCACATACTGAAGACCAACTTC GCCAAGTACTCGAAAGGGAAAATCAATCAGGAGGTCGTGACGGAGGTTCTCGGGGAAGGGATCTTCGCCGTCGATGGCGAGAAATGGAAGCAACAGAGGA AGCTCGCCAGCTTTGAATTCTCCACTCGTGTTCTTAGAGACTTCAGCTGCTCTGTATTTAGGAAGAACGCTGAGAAGCTTGTTGGTGTGGTGTCGGAGCT CGCCGGCGGTGGGACGGCGTTCGATGTCCAAGATGTTATGATGAGATGCACATTAGATTCGATATTCAAAGTGGGATTTGGAGTAGATCTGAATTGCTTG CAAGGGACGAGCAAAGAAGGGATTGGTTTCATGAAGGCATTCGATGAAGCCAATGCGTTGAGTTATTGGCGCTACGTGGATCCGTTCTGGCGATTGAAGA GGCGATTCAACTTGGGCACCGAGGCTTCTCTCAGGAGGAATGTTCAGATCATTGACACTTTCGTCACCAATGTCATCACCACCAAGCGGAGAATCGTGGC CGAGCAACGATTATGCAATGACAAAGAGGACATACTGTCGAGATTTCTGGTGGAGAGCCAGAAAGATCCGGAGAAGATGAACGATCGATACTTGAGAGAC ATAATCCTTAACTTCATGATTGCTGGGAAAGACACTAGCGCCGGAACTCTGTCTTGGTTCTTCTACATGATGTCCAAACATCCTCTAATCCAAGACAAGG TAGCTCTTGAGGTGATCCAAGTCACCAATAACGACCATTGTGATTCTGAATCGTCGTCTGTGCATGACTTCATCGAAAGTATCAACGACGCAACACTCGA CAAATTGCAGTACCTCCACGCAGCGTTAACAGAGACACTCCGGCTCTACCCTGCAGTTCCCATAGACGGGAGGACGTCGGAGGACGATGACATTTTACCG GACGGGTTCAAGGTTGAGAAGGGTGACATGGTGAGCTACTTGGCATACTCCATGGGAAGAATGCCTTACATTTGGGGCGACGACGCGGAGGATTTCAGGC CGGAAAGATGGCTCAAGGACGGAGCTTTCCAGCCTGAGTCACCTTTCAAATTTGTTTCCTTTCATGGTGGTCCAAGGATTTGTTTGGGAAGAGACTTCGC TTACCGACAGATGAAGATCATGGCGGCGGCGCTGCTTCGCTACTTCCTATTCAAGATGGCTGACGAAGAAATGAAAAGTGAAGTAACTTACAAGACCATG TTCACCCTTCATATCCATGGTGGTCTCCGTCTCCAAACTTTAAGCTCCGCCCCTGCTTCCAATTTAGCTTCCGTCAACAAATTGAATGAGCGAGTGACGA CGTCGTCTTCCGTTATCTGTCGTTATCTCTGCCGTAATTCGTACAATCAAGACTTGCTCCACCAGCTCATCAACTTCAACAGACTCCACCACTACATGAC CGATCTCGCCGCCAAACACCCGACCTACCGTTTGTTAGGCCTTTTCAGGGCCGAGGTTTACACCTCCGACCCTGCTAATGTCGAGTTCATCCTCAAGACC AACTTCCAAAACTACGGCAAGGGAGACCATAATTACAACAACCTTAGTGATCTTCTAGGCGACGGGATTTTCACGGTGGATGGCGACAAATGGCGGCAGC AGAGGAAGATCTCTAGCTATGAGTTCTCCACTAAGGTGTTGAGGGATTTCAGCAGTGTGGTGTTCAGGAAGAATGTTGTCAAACTTGCTGATATTATCTC TCGTGCTGCTCAATCTGGCCACTCCATGGATATACAGGATCTGTTCATGAAATCCACTCTGGATTCCATATTCAAGGTTGCATTCGGGGTTGAACTTGAC AGCATGTGTGGCTCAAACGAGGAAGGCACCAAATTCAGCAACGCTTTCGATGATGCAAGTGCCTTGACCCTCTTTCGGTACGTTGACCCGTTCTGGAAGG TCAAGAAGCTGTTCAACATTGGCAGTGAAGCTGCACTGAAGAAGAACGTTAAAATCGTAGAGGATTTCGTGTACAAGCTAATCAACAACAAAATCGAGCT AATGCGAACCGCCAATGATGATTATAATAACTCTACGAAAAAAGATGACATCTTGTCGAGGTTCGTCCAAGTTAAGGAGAGCCAGCAGGATCCGAAATAC TTGAGAGACATAATTCTCAACTTTGTGATTGCTGGAAAGGACACAACTGCTGCAACTCTATCTTGGTTTGTATACATGATGTGCAAGCATCCTGATGTTC AGGAGAAAGTTAGTGAAGAGATCATGGAAGCAACTGAGAGGAAGAACAAGTTCGGAGGGTTTCGCGAATTCGCGGAGAGTATTAGTGAGGAAACCTTTGA GAAGATGCAGTATCTTCATGCAGCTTTAACTGAGACTCTCAGACTGTATCCAGCTGTGCCAGTGGATGCAAAGGTTTGTCTTTGTGATGATACATTACCA GATGGTTACAGTGTGAGGAAAGGTGATATGGTGGCTTACCAGCCTTATGCAATGGGGAGGATGAAGTTCATATGGGGTGATGACTGTGAGGAATACAAAC CAGAGAGATGGCTGAACCAGGATGGCATTTTCCAGCCTGAGAGTCCCTTCAAGTTCACTGCTTTCCAGGTTAGTAATTAG
AA sequence Show only first row Show all	>Lus10009232 pacid=23160179 polypeptide=Lus10009232 locus=Lus10009232.g ID=Lus10009232.BGIv1.0 annot-version=v1.0 MDGIIIIILLTILCFTSSIILFISYHILKCYATGIKSINSPNHPPVKGTVFHQMLYFTKLYDHHTEIARTHRTFRLLAPDSSSIYTTDPRNVEHILKTNF AKYSKGKINQEVVTEVLGEGIFAVDGEKWKQQRKLASFEFSTRVLRDFSCSVFRKNAEKLVGVVSELAGGGTAFDVQDVMMRCTLDSIFKVGFGVDLNCL QGTSKEGIGFMKAFDEANALSYWRYVDPFWRLKRRFNLGTEASLRRNVQIIDTFVTNVITTKRRIVAEQRLCNDKEDILSRFLVESQKDPEKMNDRYLRD IILNFMIAGKDTSAGTLSWFFYMMSKHPLIQDKVALEVIQVTNNDHCDSESSSVHDFIESINDATLDKLQYLHAALTETLRLYPAVPIDGRTSEDDDILP DGFKVEKGDMVSYLAYSMGRMPYIWGDDAEDFRPERWLKDGAFQPESPFKFVSFHGGPRICLGRDFAYRQMKIMAAALLRYFLFKMADEEMKSEVTYKTM FTLHIHGGLRLQTLSSAPASNLASVNKLNERVTTSSSVICRYLCRNSYNQDLLHQLINFNRLHHYMTDLAAKHPTYRLLGLFRAEVYTSDPANVEFILKT NFQNYGKGDHNYNNLSDLLGDGIFTVDGDKWRQQRKISSYEFSTKVLRDFSSVVFRKNVVKLADIISRAAQSGHSMDIQDLFMKSTLDSIFKVAFGVELD SMCGSNEEGTKFSNAFDDASALTLFRYVDPFWKVKKLFNIGSEAALKKNVKIVEDFVYKLINNKIELMRTANDDYNNSTKKDDILSRFVQVKESQQDPKY LRDIILNFVIAGKDTTAATLSWFVYMMCKHPDVQEKVSEEIMEATERKNKFGGFREFAESISEETFEKMQYLHAALTETLRLYPAVPVDAKVCLCDDTLP DGYSVRKGDMVAYQPYAMGRMKFIWGDDCEEYKPERWLNQDGIFQPESPFKFTAFQVSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Lus10009232 [exp]	0	1
AT5G01450			RING/U-box superfamily protein...		Lus10002487 [exp]	1.0	0.9154
AT5G05987		PRA1.A2	prenylated RAB acceptor 1.A2 (...		Lus10030160 [exp]	2.0	0.9035
AT1G01230			ORMDL family protein (.1)		Lus10005980 [exp]	3.5	0.8869
AT1G15860			Domain of unknown function (DU...		Lus10013742 [exp]	4.1	0.8490
AT3G21610			Acid phosphatase/vanadium-depe...		Lus10035299 [exp]	4.5	0.8772
AT1G47128		RD21A, RD21	RESPONSIVE TO DEHYDRATION 21A,...		Lus10024801 [exp]	5.2	0.8607
AT1G68920	bHLH	bHLH049, ACE1	basic helix-loop-helix (bHLH) ...		Lus10013052 [exp]	5.5	0.8522
AT5G55060			unknown protein		Lus10043118 [exp]	7.3	0.8454
AT1G68140			Protein of unknown function (D...		Lus10025356 [exp]	8.1	0.8042
AT5G45380		ATDUR3	DEGRADATION OF UREA 3, solute:...		Lus10037255 [exp]	8.5	0.8219

Compare expression of checked genes

Lus10009232 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.