Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45470 469 / 1e-164 AGP8, FLA8 FASCICLIN-like arabinogalactan protein 8 (.1) AT3G60900 430 / 2e-149 FLA10 FASCICLIN-like arabinogalactan-protein 10 (.1) AT4G12730 268 / 2e-86 FLA2 FASCICLIN-like arabinogalactan 2 (.1) AT5G55730 252 / 8e-80 FLA1 FASCICLIN-like arabinogalactan 1 (.1.2) AT3G12660 124 / 6e-33 FLA14 FASCICLIN-like arabinogalactan protein 14 precursor (.1) AT2G24450 124 / 2e-32 FLA3 FASCICLIN-like arabinogalactan protein 3 precursor (.1) AT3G46550 119 / 2e-29 FLA4, SOS5 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) AT4G31370 102 / 2e-24 FLA5 FASCICLIN-like arabinogalactan protein 5 precursor (.1) AT5G03170 100 / 7e-24 ATFLA11, FLA11, IRX13 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) AT5G60490 95 / 3e-22 FLA12 FASCICLIN-like arabinogalactan-protein 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038004 [exp] 396 / 3e-139 AT2G45470 316 / 8e-108 FASCICLIN-like arabinogalactan protein 8 (.1) Lus10016617 [exp] 262 / 1e-83 AT5G55730 445 / 4e-155 FASCICLIN-like arabinogalactan 1 (.1.2) Lus10022517 [exp] 260 / 6e-83 AT5G55730 438 / 2e-152 FASCICLIN-like arabinogalactan 1 (.1.2) Lus10012344 [exp] 251 / 3e-79 AT4G12730 446 / 9e-156 FASCICLIN-like arabinogalactan 2 (.1) Lus10001178 [exp] 249 / 3e-78 AT4G12730 432 / 4e-150 FASCICLIN-like arabinogalactan 2 (.1) Lus10006391 [exp] 246 / 5e-77 AT4G12730 440 / 7e-153 FASCICLIN-like arabinogalactan 2 (.1) Lus10001752 [exp] 189 / 3e-56 AT4G12730 340 / 1e-115 FASCICLIN-like arabinogalactan 2 (.1) Lus10040821 [exp] 158 / 1e-43 AT3G46550 391 / 6e-134 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) Lus10016554 [exp] 146 / 2e-39 AT3G46550 398 / 8e-137 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G071700 [exp] 477 / 6e-168 AT2G45470 494 / 2e-174 FASCICLIN-like arabinogalactan protein 8 (.1) Potri.014G168100 [exp] 258 / 4e-82 AT4G12730 427 / 6e-149 FASCICLIN-like arabinogalactan 2 (.1) Potri.011G093500 [exp] 256 / 2e-81 AT5G55730 432 / 4e-150 FASCICLIN-like arabinogalactan 1 (.1.2) Potri.001G367900 [exp] 255 / 4e-81 AT5G55730 454 / 5e-159 FASCICLIN-like arabinogalactan 1 (.1.2) Potri.001G037800 [exp] 145 / 1e-39 AT3G12660 166 / 2e-49 FASCICLIN-like arabinogalactan protein 14 precursor (.1) Potri.018G005100 [exp] 135 / 9e-37 AT2G24450 174 / 2e-53 FASCICLIN-like arabinogalactan protein 3 precursor (.1) Potri.006G174900 [exp] 138 / 2e-36 AT3G46550 326 / 2e-108 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) Potri.006G276200 [exp] 132 / 2e-35 AT2G24450 159 / 4e-47 FASCICLIN-like arabinogalactan protein 3 precursor (.1) Potri.018G097000 [exp] 131 / 6e-34 AT3G46550 315 / 3e-104 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) Potri.006G129200 [exp] 102 / 8e-25 AT5G03170 199 / 9e-64 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02469 [flax] [poplar] Fasciclin Fasciclin domain
Representative CDS sequence Show only first row Show all	>Lus10009235 pacid=23160156 polypeptide=Lus10009235 locus=Lus10009235.g ID=Lus10009235.BGIv1.0 annot-version=v1.0 ATGGCGGCCTCCGGCTACTTCCTCCTCTTCCTCGCTCTCTCCATTTCCGCCGTTTCCGCTCACAACATCACCCAGATCCTCTCCGACTCCCCTGACTACT CCCAGTTCAACGACTACCTTACCCGAACCGGATTGGCAGACGAAATCAACAGCCGCCAGACCATAACCGTCCTAGCTCTCAACAATGGCGCAATGTCGGA TCTATCCAAACACCCCGTCTCCGTCGTCAAAAAGGCTCTCAGCCTCCTCGTCGTCCTCGATTACTTCGACCCTGCCAAGCTCCACAAGATCACCGACGGC TCCCTCCTCTCAACAACTCTCTACCAGACCACGGGAAATGCTCCCGGAAACTTCGGATTCGTCAACATCACCGATTTGCAAGGCGGTAAGGTCGGGTTCG GGTCGGCCGCTCCCGGGTCGAAGCTCGACTCCTCTTACGTCAAGCCGGTCAAACAGATCCCGTACAACATCTCGGTCGTCGAGATCACCGCTCCTATTAT TGCTCCTGGGATGTTGACAGCGCCGGCGCCGTCTGCCTCCGACGTTAACATCACGGCGTTGCTGGAGAAAGCCGGATGCAAGACGTTCGCCGGCTTGTTG CAGAGCAGTGGAGTCCTCAAGAGTTTTATGACGGCCGCCGACAAAGGATTGACCGTGTTTGCCCCCAACGACGAGGCGTTTAAGGCTCCCGGAGTTCCAG ATCTGGCGAAGTTGACGAATGCTGATACGGTGTCGCTTCTCCAGTTCCACGCCGTCCCGACTTACAAGCCGCTTGGAAGCTTGAAGGCTGCTAAAGGACC GATCTCCACGCTGGCCACCAACGGTGCCGGGAAGTTCGAGCTGACGGCGACGAAATCCGGCGACGAGGTGGTTCTCCACACGGGCGTTGCGCCGTCGAGA GTAGCAGACACGATTCTGGACTCTACTCCGCTCATGATTTTCGCAGTCGACAACGTGCTTCTCCCGGAGGAGCTGTTCGGGAAATCTCCGTCTCCGGCGC CGGCTCCTGGACCTGCAGCGACTCCATCTCCTAGCCCAGCTCCGTCCAGCGTGGAAGCGCCTTCGCCGTTGGCAGCCTCGCCACCAGCGCCGCCTGCAGA GACACCCGGAGGATCTCCAGCTGATTCTCCTGACGGTGGATCGGAGAGTAGTACGGCGGATAATGCGGCTGTTCACGTGAGTAGCGGCTCAGGGTTTTTG GCAGCAGTGGTGGCAGTGGCTGCCACTGGCTTTTGCTGGGTTCTGTTCTGA
AA sequence Show only first row Show all	>Lus10009235 pacid=23160156 polypeptide=Lus10009235 locus=Lus10009235.g ID=Lus10009235.BGIv1.0 annot-version=v1.0 MAASGYFLLFLALSISAVSAHNITQILSDSPDYSQFNDYLTRTGLADEINSRQTITVLALNNGAMSDLSKHPVSVVKKALSLLVVLDYFDPAKLHKITDG SLLSTTLYQTTGNAPGNFGFVNITDLQGGKVGFGSAAPGSKLDSSYVKPVKQIPYNISVVEITAPIIAPGMLTAPAPSASDVNITALLEKAGCKTFAGLL QSSGVLKSFMTAADKGLTVFAPNDEAFKAPGVPDLAKLTNADTVSLLQFHAVPTYKPLGSLKAAKGPISTLATNGAGKFELTATKSGDEVVLHTGVAPSR VADTILDSTPLMIFAVDNVLLPEELFGKSPSPAPAPGPAATPSPSPAPSSVEAPSPLAASPPAPPAETPGGSPADSPDGGSESSTADNAAVHVSSGSGFL AAVVAVAATGFCWVLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45470		AGP8, FLA8	FASCICLIN-like arabinogalactan...		Lus10009235 [exp]	0	1
AT2G45470		AGP8, FLA8	FASCICLIN-like arabinogalactan...		Lus10038004 [exp]	1.0	0.9519
AT2G04780		FLA7	FASCICLIN-like arabinoogalacta...		Lus10001733 [exp]	1.4	0.9381
AT4G22900			Protein of unknown function (D...		Lus10001191 [exp]	1.7	0.9296
AT5G16390		CAC1-A, BCCP-1,...	BIOTIN CARBOXYL-CARRIER PROTEI...		Lus10020619 [exp]	2.0	0.9260
AT4G18760		AtRLP51	receptor like protein 51 (.1)		Lus10005430 [exp]	3.6	0.9061
AT1G33250			Protein of unknown function (D...		Lus10008293 [exp]	3.7	0.9134
AT1G62981			Protein of unknown function (D...		Lus10024481 [exp]	4.0	0.9129
AT2G34770		ATFAH1, FAH1	ARABIDOPSIS FATTY ACID HYDROXY...		Lus10023359 [exp]	4.7	0.8900
AT5G07900			Mitochondrial transcription te...		Lus10040819 [exp]	4.8	0.8894
AT5G15350		AtENODL17	early nodulin-like protein 17 ...		Lus10030690 [exp]	4.9	0.9137

Compare expression of checked genes

Lus10009235 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.