Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01930 493 / 6e-168 C2H2ZnF zinc finger protein-related (.1) AT4G31420 43 / 0.0007 C2H2ZnF Zinc finger protein 622 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038006 [exp] 995 / 0 AT1G01930 575 / 0.0 zinc finger protein-related (.1) Lus10020150 [exp] 46 / 8e-05 AT4G31420 506 / 8e-180 Zinc finger protein 622 (.1.2) Lus10026949 [exp] 46 / 0.0001 AT4G31420 508 / 3e-180 Zinc finger protein 622 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G149800 [exp] 551 / 0 AT1G01930 527 / 0.0 zinc finger protein-related (.1) Potri.006G275300 [exp] 44 / 0.0003 AT4G31420 459 / 2e-161 Zinc finger protein 622 (.1.2) Potri.018G006300 [exp] 44 / 0.0004 AT4G31420 463 / 1e-162 Zinc finger protein 622 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009236 pacid=23160185 polypeptide=Lus10009236 locus=Lus10009236.g ID=Lus10009236.BGIv1.0 annot-version=v1.0 ATGGCTGCGGAGCCTTCTCTGGTCGTGTCCAGGACCCCCGGCAAGACAGCGGTGGCTACTACTCCTACACCAGAAAAGCGGTACCGATCCATATTCGATG TCCCTAAAGACTTCTTTGATTCCTGCTCCTTGCTCTCCCCTTCTGCAACTTCGGTCTCCGCTGCCGTTGACAAGTCTGAGAATGGTTACTTAGGCGAGCT TCCTGAAGAGAGGGTTGAAAGCGAAATCGAGAGCTCCAAAGCTGCTGCGGCAGCAGTGCCTAGATGGACCTGTAACACTTGCAAGGCGGAATTTGAATCG CTTGGGGACCAACGCTCGCATTTCAAATCTGATATACATCGAATCAATGTAAAGCTAAGTATTGCTGGGAAACACATAGTGAATGAATACGACTTCGATG AATTCATGCCTGATACTTTACGAGACTGCGATATATCAAGCATCTCAGGATCTGAAGATGAAGATGACAGAGGATCTTTGCCGTTCTTCAATGTCTTGAA GCGATCGCTTGAAGCTGTTAAACAGAAACTATATTTCCGTCTTAGGACTGGGGAGAGAATTTCACTTTGGAGATGTTTATTACTAAGCGAGTCTGAAAAG GTTTCTTATGATGACGGTAAAGCAGCTTCCACAACTCCACAGTGTTTAGGACAAAGTGACGTGACAGAGAGATTGAAGTTCTTGATGGCAGAGCCAAGAG ATAAGCAACATGTCAGGATTATGTTGCTTGCAAGTGGTGGGCACTTTGCTGGATGCGTATTTGATGGTAGTTCAGTTGTCGTCCACAAAACATTCCACAG ATATGTGGTAAGAGCCAAAGCTGGAAAAAAGCAGTCATCGAAGGATGGAACTGGCAGGGCAGCACATTCAGCAGGTTCTTCGCTTCGTCGCCATAATGAA CTTTCGTTAAAGAAGGACATCCAAGAACTATTTACTGCCTGGAAGCAATATTTTGATGCTTGCTCTTGTGTCTTCATCCATGCTCCTTCTAGCAATCATC AACTATTCTTTGATGGGGACAAAGCTTATTTCAGCCATCAGCATTCAGTTATTCGGAACATACCGATGAGTGTAAGGAGGCCAACTTTCAAAGAAGCTCG TCGCATATACAGCCTATTGACCCAATTTTCCTATGAAGGTGAGAACGATGTCCCGGCGGATTCAATAGGGGACATGGTAGCAAGTGCCGACACCATGAAA AATGTTGGCTCCGGAAATGATAAAGAAACCTTGAAGGATAGGGCTAGTGACGTGGACACCATGAAAGCTTCCTCAAGTGTCCAAACTGATATTGATCTGC TTACTTCAAGAGTCAGTGAAAGTATAAATTTAGGCACACGAACATCTTTGCATGATGCATCACAGGCTGGAGACTGTGATAAAGTCCTTGAACTCCTTGA AGAAGGTTTAGATCCTTGTGTAAAAGATGAGAAGGGACGAACTCCGTACATGCTTGCAAATGAGAAGGAAGTGAGAAATGTTTTCCGGCGTTTTATGGCC GTAAACCTTGATAGGTGGGATTGGCATGATGCTAAAGTCCCTAGTCCTTTGACGAAGGAAATGGAAGAATCTCAAGCTGCTAAACAGGCTGAGAAGGATG CGAAAAAGAAAGCAAGAGCAAAAGAATTGAAGAAATTGCGCAAGGCCAAGGAGAAGAAGGCGCAGGCTGAGGCTTCCGCAGCGAATGCAGCAGCAGCAGT GGCGCCTAATAAACAAGCAACATCGTCAGTGAACGAAGGCGGGTTGATATTATCTAAAGAGGAGGAACACCGTAGGGCACTAGCCGAGGAGAGGGAGAAA CGAGCTGCAGCAGCAGAGAGAAGAATGGCAGCTGCTGGGGGTGATTTGGCAGCCACGGGGAGCACATCACAGCCGAAAGTTGGGCTGGCAATAGCAACAG ATCCCAACAACTGCTCGTGCTGCAACGCATCGTTATCGTGCTTAGTTCCGTTCCACAGATATAACTACAAGTACTGCAGCTCGTCGTGCATGCATGTACA TAGGGAAATTCTGGAGGACGGATGA
AA sequence Show only first row Show all	>Lus10009236 pacid=23160185 polypeptide=Lus10009236 locus=Lus10009236.g ID=Lus10009236.BGIv1.0 annot-version=v1.0 MAAEPSLVVSRTPGKTAVATTPTPEKRYRSIFDVPKDFFDSCSLLSPSATSVSAAVDKSENGYLGELPEERVESEIESSKAAAAAVPRWTCNTCKAEFES LGDQRSHFKSDIHRINVKLSIAGKHIVNEYDFDEFMPDTLRDCDISSISGSEDEDDRGSLPFFNVLKRSLEAVKQKLYFRLRTGERISLWRCLLLSESEK VSYDDGKAASTTPQCLGQSDVTERLKFLMAEPRDKQHVRIMLLASGGHFAGCVFDGSSVVVHKTFHRYVVRAKAGKKQSSKDGTGRAAHSAGSSLRRHNE LSLKKDIQELFTAWKQYFDACSCVFIHAPSSNHQLFFDGDKAYFSHQHSVIRNIPMSVRRPTFKEARRIYSLLTQFSYEGENDVPADSIGDMVASADTMK NVGSGNDKETLKDRASDVDTMKASSSVQTDIDLLTSRVSESINLGTRTSLHDASQAGDCDKVLELLEEGLDPCVKDEKGRTPYMLANEKEVRNVFRRFMA VNLDRWDWHDAKVPSPLTKEMEESQAAKQAEKDAKKKARAKELKKLRKAKEKKAQAEASAANAAAAVAPNKQATSSVNEGGLILSKEEEHRRALAEEREK RAAAAERRMAAAGGDLAATGSTSQPKVGLAIATDPNNCSCCNASLSCLVPFHRYNYKYCSSSCMHVHREILEDG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01930	C2H2ZnF		zinc finger protein-related (....		Lus10009236 [exp]	0	1
AT5G11200			DEAD/DEAH box RNA helicase fam...		Lus10002021 [exp]	4.8	0.9114
AT3G15080			Polynucleotidyl transferase, r...		Lus10011026 [exp]	5.5	0.8940
AT3G14000		ATBRXL2, BRX-LI...	DZC (Disease resistance/zinc f...		Lus10000884 [exp]	8.6	0.8479
AT2G39810		HOS1	HIGH EXPRESSION OF OSMOTICALLY...		Lus10010990 [exp]	10.2	0.9025
AT1G08610			Pentatricopeptide repeat (PPR)...		Lus10042567 [exp]	11.2	0.8770
AT5G26830			Threonyl-tRNA synthetase (.1)		Lus10021402 [exp]	11.7	0.9051
AT2G42260		PYM, UVI4	POLYCHOME, uv-b-insensitive 4 ...		Lus10008728 [exp]	12.6	0.8894
AT5G06590			unknown protein		Lus10021091 [exp]	13.0	0.8789
AT2G41670			P-loop containing nucleoside t...		Lus10031060 [exp]	13.4	0.8771
AT4G02400			U3 ribonucleoprotein (Utp) fam...		Lus10030364 [exp]	13.9	0.8995

Compare expression of checked genes

Lus10009236 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.