Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06640 248 / 1e-79 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT1G06620 242 / 2e-77 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06650 239 / 4e-76 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G43450 228 / 8e-72 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G30840 227 / 1e-71 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G43440 225 / 1e-70 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G59540 221 / 5e-69 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT2G30830 219 / 1e-68 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G03410 219 / 6e-68 2A6 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G03400 216 / 3e-67 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022196 [exp] 236 / 7e-75 AT5G59530 420 / 5e-147 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022189 [exp] 234 / 5e-74 AT1G06620 418 / 3e-146 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10013314 [exp] 230 / 1e-73 AT1G06640 172 / 3e-52 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Lus10021203 [exp] 231 / 7e-73 AT1G06620 416 / 2e-145 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022195 [exp] 229 / 6e-72 AT1G06620 432 / 1e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10027585 [exp] 228 / 1e-71 AT1G06620 429 / 3e-150 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022415 [exp] 221 / 5e-69 AT1G06620 432 / 6e-152 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10000612 [exp] 220 / 1e-68 AT5G59540 337 / 2e-114 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10022191 [exp] 219 / 2e-68 AT1G06620 456 / 3e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G073100 [exp] 283 / 2e-93 AT1G06650 414 / 2e-144 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.013G045000 [exp] 249 / 5e-80 AT1G06620 369 / 6e-127 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073300 [exp] 245 / 2e-78 AT1G06620 455 / 7e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G135800 [exp] 240 / 3e-76 AT1G06620 323 / 1e-108 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073166 [exp] 237 / 2e-75 AT1G06620 470 / 7e-167 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.005G222300 [exp] 236 / 9e-75 AT1G06620 340 / 3e-115 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.008G165400 [exp] 232 / 2e-73 AT1G06620 444 / 1e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G156200 [exp] 231 / 6e-73 AT1G06650 430 / 7e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.002G040700 [exp] 220 / 1e-68 AT1G06620 330 / 2e-111 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G136000 [exp] 220 / 1e-68 AT1G06620 314 / 2e-105 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10009238 pacid=23160172 polypeptide=Lus10009238 locus=Lus10009238.g ID=Lus10009238.BGIv1.0 annot-version=v1.0 ATGGCCGCCGCCGGAGAAGCCGACCACGCCATGAGACTTTTCCACGAGGCAAAGCAAGGAGTCAAAGGCCTTGTTGACGCCGGAATCAGCAAGGTCCCAC CGTTCCTGCGCGTGTCCTCAACGGACGCGGCAATGATCGGCGGCGGAGGAGGAAATCCCCCAACAACGCCTCCGACGCCGGTGATCAACATGAGAGATCT GGGGAGACGGCGGAAGGAGGTGGTGGAGGAGATCCGAAGTGCAGCGGCGGGGTTCGGGATATTCCAAGTGGTGAATCACGGAGTGGAGGAGAGAGTGATG GAGGGGATTCTGGCGACGGCGCGTGAGTTCCACGAGCTTCCGAGGGAAGTGAAGGAGAATTATTACTCGACGGATGGGCTGGGGAGGAAGGTCTGTCTGC TGAGTGCAATGAAGAACCGGCTGAAAGACAGTTGCAATTGGGTTGACATTCTTAACTGTCAAGTGGCGCCGCCGATTGATTCCATGGAGTTTCCTCCTCT TTGCAGGGATTCCATAACGGCGTTTTTAAGCGGAGTGGGTGAATTAGGAACTACCATCTCAGAGCTAATTTCTGATGCACTCGGGCTAGATCCCCATCAC CTCAAGGAAGTGGAGGAATGTGTACACCTCCAAAGGTTCGGCCTCAACTATTATCCACCATGCCCCGAACCGGAGTTAGCCATGGGTTCGCATCCGCATC AAGATCCTTCTTCCTTCACGATCTTACTTCAAGACCAGTCTCGTAACGGGATGCTCCAGTTTCACCATCACCGGTATGGATGGGTTGATGTGCCCCCTCT TCAAGGAGCTTTTATAGTCATCATCGGAAGTCTTCTCCAGCTTATGAGCAATGACAAGTTCAAGAGTGCGGAACACAAGGTTCTAGCTAATCGTACCGGC GCCAGGGTATCGGTAGCCTGCTTTTTCAGGCCAATACTTGATCCGACGTCGATCAGTACAAAAGTGTACCAACCAATTTCGGAATTAGTATCTGATCAAA ACCCAGCTATATACCGCAAAACCAGCATGTTAGAGTTGATGAATGCCAAGCTACAAGACCATCGCCTGACTGGAGCTACAAAGTGA
AA sequence Show only first row Show all	>Lus10009238 pacid=23160172 polypeptide=Lus10009238 locus=Lus10009238.g ID=Lus10009238.BGIv1.0 annot-version=v1.0 MAAAGEADHAMRLFHEAKQGVKGLVDAGISKVPPFLRVSSTDAAMIGGGGGNPPTTPPTPVINMRDLGRRRKEVVEEIRSAAAGFGIFQVVNHGVEERVM EGILATAREFHELPREVKENYYSTDGLGRKVCLLSAMKNRLKDSCNWVDILNCQVAPPIDSMEFPPLCRDSITAFLSGVGELGTTISELISDALGLDPHH LKEVEECVHLQRFGLNYYPPCPEPELAMGSHPHQDPSSFTILLQDQSRNGMLQFHHHRYGWVDVPPLQGAFIVIIGSLLQLMSNDKFKSAEHKVLANRTG ARVSVACFFRPILDPTSISTKVYQPISELVSDQNPAIYRKTSMLELMNAKLQDHRLTGATK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06640			2-oxoglutarate (2OG) and Fe(II...		Lus10009238 [exp]	0	1
AT4G05440		EDA35	embryo sac development arrest ...		Lus10027955 [exp]	7.7	0.8751
AT3G50920			Phosphatidic acid phosphatase ...		Lus10041773 [exp]	9.2	0.8599
AT4G25810		XTH23, XTR6	xyloglucan endotransglucosylas...		Lus10011984 [exp]	14.5	0.8498
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10004517 [exp]	22.1	0.8747
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Lus10032634 [exp]	24.5	0.8652
AT2G38450			unknown protein		Lus10001262 [exp]	26.5	0.8719
AT1G10430		PP2A-2	protein phosphatase 2A-2 (.1)		Lus10030810 [exp]	28.0	0.8745
AT1G10430		PP2A-2	protein phosphatase 2A-2 (.1)		Lus10013287 [exp]	28.4	0.8744
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10012320 [exp]	31.1	0.8626
AT2G26430		ATRCY1, RCY1	arginine-rich cyclin 1 (.1.2.3...		Lus10041418 [exp]	33.0	0.8739

Compare expression of checked genes

Lus10009238 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.