Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01950 1323 / 0 AtKINUb, ARK2 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) AT1G12430 1185 / 0 AtKINUa, ARK3, PAK phosphatidic acid kinase, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, armadillo repeat kinesin 3 (.1.2) AT3G54870 540 / 5e-178 AtKINUc, CAE1, ARK1, MRH2 MORPHOGENESIS OF ROOT HAIR 2, CA-ROP2 ENHANCER 1, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, ARMADILLO REPEAT-CONTAINING KINESIN 1, Armadillo/beta-catenin repeat family protein / kinesin motor family protein (.1) AT3G63480 218 / 4e-62 ATP binding microtubule motor family protein (.1.2) AT1G59540 201 / 9e-54 ZCF125 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G44730 201 / 4e-53 AtKIN14h, ATKP1 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) AT1G72250 201 / 7e-53 Di-glucose binding protein with Kinesin motor domain (.1.2) AT2G37420 200 / 7e-53 ATP binding microtubule motor family protein (.1) AT3G17360 199 / 3e-52 POK1 phragmoplast orienting kinesin 1 (.1) AT3G19050 198 / 1e-51 POK2 phragmoplast orienting kinesin 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038007 [exp] 1629 / 0 AT1G01950 1272 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Lus10007014 [exp] 1182 / 0 AT1G12430 1304 / 0.0 phosphatidic acid kinase, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, armadillo repeat kinesin 3 (.1.2) Lus10006670 [exp] 1036 / 0 AT1G12430 1143 / 0.0 phosphatidic acid kinase, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, armadillo repeat kinesin 3 (.1.2) Lus10037965 [exp] 523 / 2e-169 AT1G01950 920 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Lus10038696 [exp] 518 / 1e-168 AT1G01950 966 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Lus10036146 [exp] 210 / 6e-56 AT3G45850 1566 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10009073 [exp] 208 / 3e-55 AT3G45850 1019 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10018120 [exp] 205 / 2e-54 AT3G45850 1583 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10024429 [exp] 205 / 5e-54 AT2G37420 1266 / 0.0 ATP binding microtubule motor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G149400 [exp] 1406 / 0 AT1G01950 1360 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Potri.014G070900 [exp] 1403 / 0 AT1G01950 1359 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Potri.003G117000 [exp] 1258 / 0 AT1G12430 1348 / 0.0 phosphatidic acid kinase, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, armadillo repeat kinesin 3 (.1.2) Potri.001G115100 [exp] 1244 / 0 AT1G12430 1325 / 0.0 phosphatidic acid kinase, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, armadillo repeat kinesin 3 (.1.2) Potri.010G227000 [exp] 556 / 0 AT3G54870 938 / 0.0 MORPHOGENESIS OF ROOT HAIR 2, CA-ROP2 ENHANCER 1, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, ARMADILLO REPEAT-CONTAINING KINESIN 1, Armadillo/beta-catenin repeat family protein / kinesin motor family protein (.1) Potri.008G035400 [exp] 291 / 6e-92 AT3G54870 345 / 8e-113 MORPHOGENESIS OF ROOT HAIR 2, CA-ROP2 ENHANCER 1, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, ARMADILLO REPEAT-CONTAINING KINESIN 1, Armadillo/beta-catenin repeat family protein / kinesin motor family protein (.1) Potri.005G038900 [exp] 226 / 9e-65 AT3G63480 533 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.016G082400 [exp] 205 / 2e-54 AT3G45850 1107 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G082900 [exp] 204 / 3e-54 AT2G37420 1219 / 0.0 ATP binding microtubule motor family protein (.1) Potri.009G026000 [exp] 204 / 4e-54 AT3G45850 1520 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat
Representative CDS sequence Show only first row Show all	>Lus10009241 pacid=23160176 polypeptide=Lus10009241 locus=Lus10009241.g ID=Lus10009241.BGIv1.0 annot-version=v1.0 ATGGCGTCCGGAGCTCACAGAAATGGCCTTCCTAGAGGCAGGTCATTCGCTGGTGGCGCCAATTCAAGGCCATCCTCCTACAAATCAAGGCCTTCTCAGC CTTCCGGATCGGCTCTCCGCCGCAACAGTACCGGTTCCTTCTCCGCCGCTGGAGATGACGGAGTTCCTGGCAGAGTTCGTGTGGCAGTGAGATTGCGGCC CAGAAATGCGGAGGAGATGATAGCAGATGCAGACTTTGCTGATTGTGTCGAACTTCAGGCAGAGTCGAAAAGGCTGAAACTGAGGAAGAACAACTGGGAT TCAGACACTTATGAGTTCGATGAGATCCTTACCGAATTCGCATCACAGAAGCGCGTCTACGAAGTTGTTGCAAAGCCTGTCGTGGAGAGTGTGCTAGATG GTTACAATGGGACTGTCATGGCCTACGGGCAGACTGGCACTGGTAAAACTTTCACTGTTGGACACCTTGGAGACGGTGATACAGCCTCTCGTGGAATTAT GGTTCGTGCAATGGAGGATATTCTGGCAGACATTGCTCCAGAGACTGATTCTGTTGCAGTTTCATATCTGCAGCTCTATATGGAGACAATCCAGGACCTT CTCGATCCTGCAAATGATAATATTTCCATTGTAGAAGATCATAAAACTGGTGATGTTTCACTTCCTGGAGCAACTCTTCTTCACATCAGAGACCAGCAGA GTTTTTTGGAGCTTCTAAGCATAGGAGAAACTCAGAGAATAGCTGCCAACACAAAGTTGAATACGGAATCGTCTCGTAGCCATGCCATTCTGATGGTACA TGTTAAGAGGTCAGTTGCAACCCAGGAGGATACTATTTCAAGTGAAAATGATAACTCTTCTCATTTGGTAAAACCAACAAGGCCTCTCATTCGGAGAAGC AAATTGGTTCTAGTTGATCTGGCAGGTTCAGAGCGAGTTCATAAGTCAGGAAGCGAGGGTCATATGTTGGAGGAAGCTAAATCCATCAATCTCTCATTGA GTGCACTAGGGAAGTGCATAAATGCTCTAGCTGAAAATAGCTCACACGTACCAGTTCGTGATTCAAAACTTACAAGGTTGCTGAAGGATTCATTTGGAGG CACAGCTAGGACTTCATTAATTGTTACAATTGGCCCATCACCTCGCCATCGGGGAGAGACTGCAAGTACAATACAATTTGGCCAAAGGGCTATGAAGGTT GAGAATATGTTGAAAATAAAGGAAGAGTTTGATTATAAAAGTCTGTCCAGAAAGCTCGAGGTACAAGTGGACAAGCTTATTGCAGAGAATGAAAGGCAGC TGAAAGCTTACGATGATGAACTTGAAAGAATAAATCAAGAAGCTCAAAATCGTATTGCTGAGGTCGAGAGGAACTTTGCTGAAGCGTTAGAGAAGGAAAG GCTAAAGTGCCAGATGGAATATATGGAATCCGTGAAGACATTGGAGGAAAAAATGTTGGCTAATCAACGAAAGCTTGGCAGTGATGACATCGTTAATAAT AGATGCAATTCAGAGGATCGAGGCTTGTCCATCTCTGATGAGGTTGCCGAGGTAAGAAAATTGCTTCAGAATGAAATTCGACAAAGAAAGACGGCTGAGG AAGAGGTCAGCAAGCTTAAGACTCGGTTGGGACAAATAATGGAGTCTGAGGCAGGTGGAGATGGAGAGATGTTAAGGATTCACAACATTCTGGATGATGA AGTTCAGAAGAAGAGAAAACTGGAAGAAGAAGTTATAATCTTACGAAGCCAGTTATTACAGCTGAGTTTCGAAGCTGATCAGACAAGAAGGGGTATGGAC AGAGTTGGATCAGGGAATGGTTTCAATGGAATGGATTCTCTTTCGTCTCATGCTAGGCAAGCCCCATCAGCAAATGGACAGAAAGCACCAGCAACTGCAC TTTTTGAACAAGTTGGGTTGCATCAGATATTATCCTATTTGGAGTCTGAGGATGCTAATGTCCAAATTCACGCAGTAAAAGTGTTGGCTAATTTAGCAGC CGAAGAAGCTAATCAGGAAAAGATAGTTGAAGCTGGTGGCCTCACGTCCTTGCTGATGCTTCTTCAAAAATTTGAGGATGAAACTGTTCGCAGAGTAGCT GCCGGAGCCATTGCCAACCTCGCTATGAACGGCGAGTCCTCTCAAGTTAATCAAGAACTCATTATGACGGAAGGAGGTATAAGTTTGCTAACCATGACGG CAGCTGATGCTGAGGATCCTCAAACTCTTCGTATGGTTGCTGGTGCTATTGCGAATCTCTGCGGGAACGATAAGCTGCAAACGAGGCTGAGGTCTGAAGG TGGGATAAAGGCACTGTTAGGAATGGTGAGATGTGGACATGCAGACGTTCTTTCCCAAGTCGCTCGAGGCATAGCTAACTTCGCGAAATGCGAGTCTCGT GCAGCTACTCAAGGAACAAAAAGCGGAAGATCGCTTCTGATAGAAGATGGCACGCTTTCGTGGATTGTACAGAACGCCAACAACGAAGCTGCTCCGATCA GACGCCATATCGAGCTAGCGTTATGCCACCTGGCTCAGCACGAGGTGAATGCCAAGGACATGATAAGTGGGGGAGCATTGTGGGAGCTAGTCCGGATCTC CCACGACTGTTCTAGGGAAGACATAAGGACTCTTGCTCGTCGGACACTGAACTCGAGTCCTACGTTTCGATCGGAGATGCGGCGGCTGAGGATAGATTGA
AA sequence Show only first row Show all	>Lus10009241 pacid=23160176 polypeptide=Lus10009241 locus=Lus10009241.g ID=Lus10009241.BGIv1.0 annot-version=v1.0 MASGAHRNGLPRGRSFAGGANSRPSSYKSRPSQPSGSALRRNSTGSFSAAGDDGVPGRVRVAVRLRPRNAEEMIADADFADCVELQAESKRLKLRKNNWD SDTYEFDEILTEFASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTVGHLGDGDTASRGIMVRAMEDILADIAPETDSVAVSYLQLYMETIQDL LDPANDNISIVEDHKTGDVSLPGATLLHIRDQQSFLELLSIGETQRIAANTKLNTESSRSHAILMVHVKRSVATQEDTISSENDNSSHLVKPTRPLIRRS KLVLVDLAGSERVHKSGSEGHMLEEAKSINLSLSALGKCINALAENSSHVPVRDSKLTRLLKDSFGGTARTSLIVTIGPSPRHRGETASTIQFGQRAMKV ENMLKIKEEFDYKSLSRKLEVQVDKLIAENERQLKAYDDELERINQEAQNRIAEVERNFAEALEKERLKCQMEYMESVKTLEEKMLANQRKLGSDDIVNN RCNSEDRGLSISDEVAEVRKLLQNEIRQRKTAEEEVSKLKTRLGQIMESEAGGDGEMLRIHNILDDEVQKKRKLEEEVIILRSQLLQLSFEADQTRRGMD RVGSGNGFNGMDSLSSHARQAPSANGQKAPATALFEQVGLHQILSYLESEDANVQIHAVKVLANLAAEEANQEKIVEAGGLTSLLMLLQKFEDETVRRVA AGAIANLAMNGESSQVNQELIMTEGGISLLTMTAADAEDPQTLRMVAGAIANLCGNDKLQTRLRSEGGIKALLGMVRCGHADVLSQVARGIANFAKCESR AATQGTKSGRSLLIEDGTLSWIVQNANNEAAPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISHDCSREDIRTLARRTLNSSPTFRSEMRRLRID

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01950		AtKINUb, ARK2	Arabidopsis thaliana KINESIN U...		Lus10009241 [exp]	0	1
AT4G14920			Acyl-CoA N-acyltransferase wit...		Lus10006110 [exp]	1.7	0.9162
AT1G63020		SMD2, PolIVa, S...	SILENCING MOVEMENT DEFICIENT 2...		Lus10002955 [exp]	2.4	0.9112
AT1G80490		TPR1	TOPLESS-related 1 (.1.2)		Lus10038094 [exp]	4.5	0.8805
AT1G53050			Protein kinase superfamily pro...		Lus10035892 [exp]	9.0	0.8946
AT1G64570		DUO3	DUO POLLEN 3, Homeodomain-like...		Lus10001147 [exp]	11.3	0.8961
AT5G07740			actin binding (.1)		Lus10003482 [exp]	11.5	0.8901
AT3G05040		HST1, HST	HASTY 1, HASTY, ARM repeat sup...		Lus10004145 [exp]	12.8	0.8920
AT1G29370			Kinase-related protein of unkn...		Lus10007338 [exp]	13.3	0.8481
AT5G40480		EMB3012	embryo defective 3012 (.1)		Lus10022271 [exp]	14.2	0.9123
AT1G27595			unknown protein		Lus10028229 [exp]	14.5	0.9049

Compare expression of checked genes

Lus10009241 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.