Gene [FLAX] | FIBexDB

Lus10009243 [FLAX]

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JGI Phytozome v13

[genome browser]

Symbol

Arabidopsis homologues

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No hit found

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10001476 [exp]	192 / 9e-63	ND	/
Lus10027682 [exp]	184 / 4e-60	AT1G48120	45 / 4e-06	hydrolases;protein serine/threonine phosphatases (.1)
Lus10004836 [exp]	181 / 4e-58	ND	/
Lus10000712 [exp]	179 / 6e-58	ND	/
Lus10010058 [exp]	179 / 1e-57	ND	36 / 0.007
Lus10033204 [exp]	180 / 8e-57	AT2G25010	50 / 4e-07	Aminotransferase-like, plant mobile domain family protein (.1)
Lus10033216 [exp]	179 / 3e-55	AT1G48120	41 / 0.002	hydrolases;protein serine/threonine phosphatases (.1)
Lus10007996 [exp]	173 / 3e-55	ND	/
Lus10025327 [exp]	172 / 1e-53	ND	/

Poplar homologues

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No hit found

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
		PF10536 [flax] [poplar]	PMD	Plant mobile domain

Representative CDS sequence

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>Lus10009243 pacid=23160171 polypeptide=Lus10009243 locus=Lus10009243.g ID=Lus10009243.BGIv1.0 annot-version=v1.0

ATGCCACATGCCCACATCTATTGGCTTCCATTCAGTCCACCTGACTTCGACTATGAGGCTCGGTGGTCCATGTACAGAGGGGGCATACATACATTTGACT

ACGTTGAGCTCCACGATCCCAGCCGTGTGTTGCGTCAGTACGGCTACCGGCAGACGATCCCGAATTCGATTCTCACGCCGGAGTTAACTTCTCGACCGGC

GGATGGGACGCTGTACGTAGTCAGACACTACATGTTTGACTACAGTCGGTTTGGGAATTTGCTTGCCTCGATGTACTCCAGCACGTGTAGTGTGCCCGGA

GCGCCCGACGGTAACGCGTCGACGGAGTACATGGCGTGGAAATTAGGGTTTAGTCATGGTAATCATCGGAATTCACCTCCTCCACCTTATGTTCCAGAGG

GTAGTGTCCGGGGAGGATGTTGCTCCGGGGTACATGGACTAGTATCTCGAACACAGTTACCGCGCATCGTGGCGCCGTTCGATTCCGGTGTAGGCGTCCC

TCCTGAGATTCGTGTCTTCGATGGTATGGCGTCTGATTTCGATGGGACACTTGGGAGGCAGCACATGGACTCGCCTCAGGAGTACTAA

AA sequence

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>Lus10009243 pacid=23160171 polypeptide=Lus10009243 locus=Lus10009243.g ID=Lus10009243.BGIv1.0 annot-version=v1.0

MPHAHIYWLPFSPPDFDYEARWSMYRGGIHTFDYVELHDPSRVLRQYGYRQTIPNSILTPELTSRPADGTLYVVRHYMFDYSRFGNLLASMYSSTCSVPG

APDGNASTEYMAWKLGFSHGNHRNSPPPPYVPEGSVRGGCCSGVHGLVSRTQLPRIVAPFDSGVGVPPEIRVFDGMASDFDGTLGRQHMDSPQEY

DESeq2's median of ratios [FLAX]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10009243 [exp]	0	1

Lus10009243 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.