Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60860 1568 / 0 SEC7-like guanine nucleotide exchange family protein (.1) AT1G01960 1455 / 0 EDA10 embryo sac development arrest 10, SEC7-like guanine nucleotide exchange family protein (.1) AT4G38200 1021 / 0 SEC7-like guanine nucleotide exchange family protein (.1) AT4G35380 953 / 0 SEC7-like guanine nucleotide exchange family protein (.1) AT3G43300 800 / 0 BEN1, ATMIN7 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2) AT5G39500 213 / 2e-55 GNL1, ERMO1 ENDOPLASMIC RETICULUM MORPHOLOGY 1, GNOM-like 1 (.1) AT1G13980 211 / 6e-55 VAN7, EMB30, GN VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) AT5G19610 138 / 2e-32 GNL2 GNOM-like 2 (.1) AT5G27970 74 / 8e-13 ARM repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009300 [exp] 1833 / 0 AT3G60860 2741 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10022983 [exp] 1078 / 0 AT4G38200 2320 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10001620 [exp] 1071 / 0 AT4G38200 2254 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10015863 [exp] 1047 / 0 AT4G38200 1880 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10009803 [exp] 541 / 1e-162 AT3G43300 2569 / 0.0 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2) Lus10038084 [exp] 483 / 2e-142 AT3G43300 2350 / 0.0 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2) Lus10036789 [exp] 215 / 7e-56 AT1G13980 2300 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Lus10026627 [exp] 209 / 4e-54 AT1G13980 2395 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Lus10030432 [exp] 204 / 1e-52 AT1G13980 2383 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G070600 [exp] 1766 / 0 AT3G60860 2664 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.002G149200 [exp] 1749 / 0 AT3G60860 2689 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.009G169800 [exp] 1091 / 0 AT4G38200 2335 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.004G208400 [exp] 1080 / 0 AT4G38200 2354 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.006G216900 [exp] 558 / 1e-168 AT3G43300 2728 / 0.0 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2) Potri.017G078900 [exp] 210 / 2e-54 AT1G13980 2416 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Potri.017G078800 [exp] 206 / 4e-53 AT1G13980 2180 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Potri.018G075300 [exp] 135 / 1e-31 AT5G19610 1796 / 0.0 GNOM-like 2 (.1) Potri.013G035100 [exp] 91 / 1e-17 AT5G27970 2284 / 0.0 ARM repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09324 [flax] [poplar] DUF1981 Domain of unknown function (DUF1981) PF01369 [flax] [poplar] Sec7 Sec7 domain
Representative CDS sequence Show only first row Show all	>Lus10009244 pacid=23160181 polypeptide=Lus10009244 locus=Lus10009244.g ID=Lus10009244.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCGGAAGCCGATTCCCGGTTAAGCCAAGTCGTAGCTCCTGCACTTGAGAAGATCATCAAGAACGCATCCTGGCGGAAACACTCTAAGCTTG CTCATGAATGCAAATCCGTTCTCCAGAGGCTCAATTCTCCGCGGAAGCAGCAGCAGCAGTCGTTGTCGTCGTCTGCAGCTGACCCGGAAGCTTCAGTTCC CGGCCCGCTTCACGATGGCGGTACATTTGAGTATTCTCTCGCGGAATCCGAATCCATCCTTGGCCCTCTCATCAGTGCTTGCGGCACTGGAGTGCTCAAG ATTGTGGATCCTGCCATTGATTGCATCCAGAAATTGATTGCGTATGGCTACTTGCGGGGCGAGGCTGACCCGGCGGAAGGTGCGGAGGTCGCGCTGCTAG CTAGGCTGATCGGATCAGTTTGTAAATGCTATGATATTGGTGATGATGCAATCGAGCTTTCTGTTCTGAAAGCGCTTCTATCCGCAGTGACTTCCGTTTC CTTGCGGATACACGGAGATTGCTTGTTGCAGATAGTCAGGACTTGTTACGATACGTATCTAGGGAGCAACAATGTTGTCAATCAGACCACCGCCAAGGCT TCATTGATACAAATCCTGGTCATTGTGTTTCGGAGGATGGAAGCTGACTCATCGACGGTGCCAGTTCAGCCCATTGTTGTGGCTGATTTGATGACACCCG TGGAAAGATCAGATGGGGATGGGTCTATGACTATGTTTGTGCAAGGTTTCATAACCAAAATCATGCACGGCATTGATGGGGTTTTGAATGCCGGGGCTCC GAGTAAGATCGCCGTAGGACACGATGGTGCATTTGAGACTACAACGGTCGAGACAACGAACCCTACAGATTTGTTAGATTCCACGGATAAGGATATGTTG GACGCCAAGTATTGGGAGATTAGTATGTATAAGACGGCATTGGAAGGTCGGAAAGGAGAACTGGCAGACGGGGAAGTTGAACGAGACGAGGATTTGGATG TACAGATTGGTAATAAATTAAGAAGAGATGCATTCTTGGTGTTTAGAGCGCTCTGTAAGCTGTCCATGAAAACTCCTCCAAAGGAGGCATCAGCTGATCC CCAGTTGATGAGAGCAAAAATTGTGGCCTTGGAGTTGTTGAAGATTTTATTGGAGAATGCTGGGGCCGTTTTTAGGACTAGTGACAGGTTTTTGGGTGCC ATCAAGCAGTACTTATGCTTATCATTATTGAAGAACAGTGCTTCAAGTCTCATGATCGTCTTTCAACTTTCTTGCTCTATATTTGTGAGTCTCGTGTCCA GATTTAGGGCAGGGTTGAAAGCAGAAATTGGAGTCTTTTTCCCTATGATCGTGCTCAGGGTTCTTGAAAATGTTGCACAACCTAATTTCCAGCAGAAGAT GATTGTGCTCCGGTTCATTGAAAAGCTCTGTGTGGACTCACAGATTCTAGTAGATATATTTATTAACTATGATTGTGATGTAAATTCATCCAACATATTC GAGAGAATGGTCAATGGACTTCTTAAAACGGCACAAGGGGTTCATCCTGGTACTGCACCATCACTAATGCCTCCTCAGGAGGCGACTCTGAAACTTGAGG CCATGAAGTGTCTAGTTGCTGTTTTGAAATCGATGGGAGATTGGGCTAACAAACAGCTACGAATTGCTGATCCTAGTTCTGCAAATAAACAAGATGCAGT TGAGAATAGTCCTGAAACTGGAAGCTTTTCCACGATAAACGGAAATGGGGAAGTGCCAGCTCAAGGATCGGATTTTCCGTCTGAAACCTCCATCGAAACT TCTGATGTTTCATTGATTGAGGAACGCAGGGCTTACAAACTGGAACTTCAGGGCTTCAGGCTACCTGGTGAGGCACAAAAGATTGATAGAATCATGGAGA AGTTTGCTGAGCGTTACTGCAAATGTAACCCGAAGGTTTTTATTAGCTCCGACACAGCCTATGTTCTTGCTTACTCGGTGATATTGCTTAATACCGATGC TCACAATCCTATGGTTAAAAATAAGATGTCAGCAGATGATTTCATTAGAAACAATAGAGGCATTGATGACGGGAAAGATATTCCTGAAGAATACTTGCGC TCATTGTATGGAAGGATATCAACAAATGAGATCAAAATGAAAGAGGATGCTTTTGATGTCCAACAAATACAGTCGACTAACTCTAACAGAATTTTAGGCT TGGATAGTATTTTGAATATTGTAGTTCTTAAGAGGGGCGAGGACAGACATGTGGAGACTAGCGATGATTTGATCAGGTATATGCAAGAGCAGTTCAAAGA AAAAGCCCAAAAATCTGAGTCAGCTTATTATGCCGCTACAGATGTTGTTATCCTTCGGTTCATGGTTGAGGTATGCTGGGCTCCTATGTTAGCTGCCTTC AGTGTGCCTCTAGACGAAAGTGATGATGAAGTCGTGATAGGTCTTTGTCTTGAAGGTTTCCGCTGTGCCATCCATGTAACTGCCGTAATGTCCTTGAAGA CTCACAGAGATGCATTTGTGACTTCATTGGCAAAGTTTACTTCACTTCACTCTCCTGCAGACATCAAACAGAAAAATGTTGCCGCAATTAAGGCACTAGT TACCATTGCAGATGAAGAGGGAAATTTTTTGCAGGAAGCCTGGGAGCATATTTTGACATGCGTCTCTCGCTTCGAGCATCTCCATCTTTTGGGAGCGGGT GCTCTTCCAGACGCGACATTTTTTTCCTTTCCTCAAAATGAGTCTGTAAAAACAAAACCAGCCAAGTCGAGTATCCTTCCTGTTCTGAAGAAGAAGGGTC CTGGAAGACTGCAGTATGCGGCTGCTGCTGCTGTCCTGAGAGGTTCATATGACAGTGCTAGTATCGGGGGCAATGTTTCTGTGAGTGTTTCGACTGACCA AATGAACATATTGGTTTCCAATTTCACTATGTTAGAACAAGCCGGGAGCTCTGAAATGAATCGCATATTCACACGCAGCCAAAAGTTGAACAGTGAGGCG ATCATTGAATTTGTTAAGGCTCTTTGCAAGGTATCCATAGAGGAGTTGCGCTCTGCATCTGACCCCCGGGTGTTTAGCCTTACGAAGATTGTTGAGATTG CGCACTACAACATGAACCGCATAAAGCTTGTCTGGTCAAGCATCTGGCATGTGCTCTCGGATTTCTTTGTAACCATTGGCTGTTCTGAGAACCTCTCCAT TTCCATTTTCGCAATGGACTCGTTGCGCCAGTTATCAATGAAGTTCTTAGAGCGTGAAGAGTTCGCTAACTACAATTTCCAGAATGAATTCATGAAGCCT TTCGTCATTGTCATGCGTAAGAGCAGTGCTGTTGAGATCAGAGAGCTGATTATCAGATGCGTCTCTCAAATGGTTTTATCTCGAGTAAAGCATGTCAAAT CCGGATGGAAGAGCATGTTCATGGTTTTCACAACAGCAGCTTATGATGACCACAAAAACATTGTTCTGCTGGCTTTCGAAATAATGGAGAAGATAATCTG TGATTACTTCCCATATATGACTGAAACTGAGACGACCACCTTCACGGATTGTGTGAATTGCCTGATTGCTTTCACCAATAGCCGATTCGACAAAGATATC AGCCTGAATGCCATCGATTTTCTTCGATTCTGCGCTTCCAAACTTGCGGAAGAAGATCTTCAATCTACATCAGGGAATAAGGAAATAGAAGCTTTGCCAA GCACTTCTTCCTCTTCACTTAATACAGTAAAAGACGGGGAGCAAGAAAATGAGCATATAGATTACAGGGAGGATCATCTCTACTTTTGGTTCCCTTTATT GGCAGGTCTGTCAGAACTTAGCTTTGATCCTAGGCCAGAGATCAGAACCAGTGCCTTACAAGTCTTGTTCGATACTTTACGCAATCACGGCCATCTTTTC TCTCTACCGTTATGGGAACGAGTATTCGAGTCAGTACTGTTTCCAATCTTCGACTATGTCTGGCACGCAATTGATCCAACTGGGGGGGACTCTCCAGGGC AAGGTATCGACACCGACACGGGTGGTGAGCTTGATCAAGACGCATGGCTTTACGAAACTTGCACATTGGCTCTCCAGCTGGTAGTAGATCTTTTCGTCAA GTTCTACAATACTGTGAACCCGCTCTTGAGGAAAGGTTTGAAGCTTCTGGTTAGCTTTATCAGGCGTCCTCACCAGAGCCTTGCTGGTATCGGCATCGCG GCCTTTGTGCGGTTGATGAGCAATGCCGGCTATATGTTTTCTGACGAGAAGTGGCGAGAAGTTGTCTTCTCGGTGAGAGAAGCTGGTAACACAACGCTTC CTGATTTCTCTTATCTAGTGAGTGGAGAGACTTCAGTGCCAAGAAACGGACATGCTATAATAAGTGAAGAAAACAATGTAGAGAACGGCGAATCGGGAGA TGATCCTGAGAGATTGATTACGGAACGGCTTCATGCTGCAATATCTGTTGCCAAGTGTCGTGCTGCTGTCCAGCTTCTGTTGATTCAGGCAGTAATGGAG ATCTACAGCATGTATAGGCCACAACTTTCAGCAAGAAACACACTCGTCCTCTTCGACTCCCTACACGACGTGGCTTCCCACACTCACAAAATCAACACGG ACGCCCATCTCCGCTTGAAGCTACAAGAACTCAGCTGGACGGCCCAAATGCAGGACCCGCCGCTGCTACGTCTCGAGAACGAGTCTTTCCAAATATGCCT CACTTTCTTGCAGAACCTCATACTGGACCGGCCACCGGGGTACGACGAGACCGAAGTGGAATCTTGCCTCGTCAGCGTCTGCCAGGAGGTGCTCCAGTTC TACATCGGCACTGCTCGATCTCGACAGACTCATTCTCCGAGCGAGCCACGCCAGCTTCTTCTCCGGTCTCTGATCCCTCTGGGGTCCGGGAAACGAAGGG AGTTGGCTGCTCGTGGCCCCCTCATCGTTTCGACTCTCCGCGCCATTTGTAGTATGGGGGAAGCTTCGTTGGGGAGGAACTTGTGTGGTTTGTTCCCTCT GTTGTCGAACTTGATAAGTTGCGAGCACGGTTCGAAGGAGGTCCAGGTTGCTCTTAGTTTGATGCTGAGGGAGTCGGTAGGTCCAGTTTTGTTTCAATCT TGCTGA
AA sequence Show only first row Show all	>Lus10009244 pacid=23160181 polypeptide=Lus10009244 locus=Lus10009244.g ID=Lus10009244.BGIv1.0 annot-version=v1.0 MASSEADSRLSQVVAPALEKIIKNASWRKHSKLAHECKSVLQRLNSPRKQQQQSLSSSAADPEASVPGPLHDGGTFEYSLAESESILGPLISACGTGVLK IVDPAIDCIQKLIAYGYLRGEADPAEGAEVALLARLIGSVCKCYDIGDDAIELSVLKALLSAVTSVSLRIHGDCLLQIVRTCYDTYLGSNNVVNQTTAKA SLIQILVIVFRRMEADSSTVPVQPIVVADLMTPVERSDGDGSMTMFVQGFITKIMHGIDGVLNAGAPSKIAVGHDGAFETTTVETTNPTDLLDSTDKDML DAKYWEISMYKTALEGRKGELADGEVERDEDLDVQIGNKLRRDAFLVFRALCKLSMKTPPKEASADPQLMRAKIVALELLKILLENAGAVFRTSDRFLGA IKQYLCLSLLKNSASSLMIVFQLSCSIFVSLVSRFRAGLKAEIGVFFPMIVLRVLENVAQPNFQQKMIVLRFIEKLCVDSQILVDIFINYDCDVNSSNIF ERMVNGLLKTAQGVHPGTAPSLMPPQEATLKLEAMKCLVAVLKSMGDWANKQLRIADPSSANKQDAVENSPETGSFSTINGNGEVPAQGSDFPSETSIET SDVSLIEERRAYKLELQGFRLPGEAQKIDRIMEKFAERYCKCNPKVFISSDTAYVLAYSVILLNTDAHNPMVKNKMSADDFIRNNRGIDDGKDIPEEYLR SLYGRISTNEIKMKEDAFDVQQIQSTNSNRILGLDSILNIVVLKRGEDRHVETSDDLIRYMQEQFKEKAQKSESAYYAATDVVILRFMVEVCWAPMLAAF SVPLDESDDEVVIGLCLEGFRCAIHVTAVMSLKTHRDAFVTSLAKFTSLHSPADIKQKNVAAIKALVTIADEEGNFLQEAWEHILTCVSRFEHLHLLGAG ALPDATFFSFPQNESVKTKPAKSSILPVLKKKGPGRLQYAAAAAVLRGSYDSASIGGNVSVSVSTDQMNILVSNFTMLEQAGSSEMNRIFTRSQKLNSEA IIEFVKALCKVSIEELRSASDPRVFSLTKIVEIAHYNMNRIKLVWSSIWHVLSDFFVTIGCSENLSISIFAMDSLRQLSMKFLEREEFANYNFQNEFMKP FVIVMRKSSAVEIRELIIRCVSQMVLSRVKHVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIMEKIICDYFPYMTETETTTFTDCVNCLIAFTNSRFDKDI SLNAIDFLRFCASKLAEEDLQSTSGNKEIEALPSTSSSSLNTVKDGEQENEHIDYREDHLYFWFPLLAGLSELSFDPRPEIRTSALQVLFDTLRNHGHLF SLPLWERVFESVLFPIFDYVWHAIDPTGGDSPGQGIDTDTGGELDQDAWLYETCTLALQLVVDLFVKFYNTVNPLLRKGLKLLVSFIRRPHQSLAGIGIA AFVRLMSNAGYMFSDEKWREVVFSVREAGNTTLPDFSYLVSGETSVPRNGHAIISEENNVENGESGDDPERLITERLHAAISVAKCRAAVQLLLIQAVME IYSMYRPQLSARNTLVLFDSLHDVASHTHKINTDAHLRLKLQELSWTAQMQDPPLLRLENESFQICLTFLQNLILDRPPGYDETEVESCLVSVCQEVLQF YIGTARSRQTHSPSEPRQLLLRSLIPLGSGKRRELAARGPLIVSTLRAICSMGEASLGRNLCGLFPLLSNLISCEHGSKEVQVALSLMLRESVGPVLFQS C

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60860			SEC7-like guanine nucleotide e...		Lus10009244 [exp]	0	1
AT5G10470		KAC1, KCA1	KINESIN CDKA;1 ASSOCIATED 1, k...		Lus10035940 [exp]	1.0	0.9258
AT5G39420		CDC2CAT	CDC2C (.1)		Lus10030692 [exp]	3.9	0.9059
AT2G02910			Protein of unknown function (D...		Lus10036741 [exp]	5.3	0.8953
AT5G05970		NEDD1	NEURAL PRECURSOR CELL EXPRESSE...		Lus10030162 [exp]	5.7	0.9089
AT5G61910			DCD (Development and Cell Deat...		Lus10032534 [exp]	6.8	0.8893
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10038381 [exp]	7.5	0.8924
AT4G03550		ATGSL5, PMR4, G...	POWDERY MILDEW RESISTANT 4, gl...		Lus10031648 [exp]	9.8	0.9131
AT1G72410			COP1-interacting protein-relat...		Lus10008140 [exp]	10.4	0.9039
AT1G30360		ERD4	early-responsive to dehydratio...		Lus10024894 [exp]	10.6	0.8934
AT4G11450			Protein of unknown function (D...		Lus10035493 [exp]	12.1	0.8902

Compare expression of checked genes

Lus10009244 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.