Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16870 249 / 2e-85 Peptidyl-tRNA hydrolase II (PTH2) family protein (.1) AT3G03010 231 / 3e-78 Peptidyl-tRNA hydrolase II (PTH2) family protein (.1), Peptidyl-tRNA hydrolase II (PTH2) family protein (.2) AT4G32900 115 / 9e-33 Peptidyl-tRNA hydrolase II (PTH2) family protein (.1), Peptidyl-tRNA hydrolase II (PTH2) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011608 [exp] 49 / 3e-08 AT4G32900 89 / 5e-24 Peptidyl-tRNA hydrolase II (PTH2) family protein (.1), Peptidyl-tRNA hydrolase II (PTH2) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G050100 [exp] 277 / 3e-96 AT5G16870 259 / 2e-89 Peptidyl-tRNA hydrolase II (PTH2) family protein (.1) Potri.006G237900 [exp] 114 / 3e-32 AT4G32900 238 / 1e-80 Peptidyl-tRNA hydrolase II (PTH2) family protein (.1), Peptidyl-tRNA hydrolase II (PTH2) family protein (.2) Potri.013G082850 [exp] 97 / 3e-27 AT3G03010 100 / 8e-29 Peptidyl-tRNA hydrolase II (PTH2) family protein (.1), Peptidyl-tRNA hydrolase II (PTH2) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0305 [flax] [poplar] PTH2 PF01981 [flax] [poplar] PTH2 Peptidyl-tRNA hydrolase PTH2
Representative CDS sequence Show only first row Show all	>Lus10009246 pacid=23160170 polypeptide=Lus10009246 locus=Lus10009246.g ID=Lus10009246.BGIv1.0 annot-version=v1.0 ATGGGTTTCAGTTGGCTTACCGCCATATTACTCGGGGCTGGTTGCGTTGCTTTGGGTTATTGTATTGGTTCTCGCCGCCATGGTCTCCACTTTCTCCAAT CCAGACTGGTTAACGGTTCCAGTGATGGGAAATCCAAAAGCAAGTCGAAGAAGGAGCCCTTCGAAATCGAAAAGCTCGCACATATTCTCGAAGATTTCAA AATGGTTCTGGTTGTGAGAAATGATCTTAAGATGGGCAAAGGGAAAATCGCCGCCCAGTGCAGTCATGCAACTCTGGGCCTTTATAAGAAGCTGCTTCAT CGAGCACCAAAGGCTTTAAACAGGTGGGAGATGTGCTCGCAGCCAAAGGTGGTTGTCAAAATCGACAGCGAGGACGATATGCTGATTTTGCAAGAGAAGG CTAAATCATTGAAATTACCAAGCCACATAACTATTGATGCAGGGAGGACGCAGATTGCCCCAAATTCAAGGACTGTGATGGCTCTCCTGGGACCTGTTGA GGTAGTTGATGACGTGACAGGAGGACTGAAGCTATTGTAG
AA sequence Show only first row Show all	>Lus10009246 pacid=23160170 polypeptide=Lus10009246 locus=Lus10009246.g ID=Lus10009246.BGIv1.0 annot-version=v1.0 MGFSWLTAILLGAGCVALGYCIGSRRHGLHFLQSRLVNGSSDGKSKSKSKKEPFEIEKLAHILEDFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKLLH RAPKALNRWEMCSQPKVVVKIDSEDDMLILQEKAKSLKLPSHITIDAGRTQIAPNSRTVMALLGPVEVVDDVTGGLKLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16870			Peptidyl-tRNA hydrolase II (PT...		Lus10009246 [exp]	0	1
AT1G49390			2-oxoglutarate (2OG) and Fe(II...		Lus10008824 [exp]	1.7	0.9367
AT3G18940			clast3-related (.1)		Lus10023834 [exp]	5.2	0.9141
AT5G16950			unknown protein		Lus10021093 [exp]	5.5	0.9131
AT5G67590		FRO1	FROSTBITE1, NADH-ubiquinone ox...		Lus10019261 [exp]	6.2	0.9210
AT5G46840			RNA-binding (RRM/RBD/RNP motif...		Lus10000904 [exp]	7.5	0.9190
AT3G58180			ARM repeat superfamily protein...		Lus10007032 [exp]	7.7	0.9075
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Lus10017066 [exp]	7.7	0.9268
AT1G24050			RNA-processing, Lsm domain (.1...		Lus10010705 [exp]	8.0	0.9045
AT3G25120			Mitochondrial import inner mem...		Lus10013127 [exp]	8.1	0.8950
AT5G20500			Glutaredoxin family protein (....		Lus10017148 [exp]	9.2	0.9173

Compare expression of checked genes

Lus10009246 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.