Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03050 1905 / 0 RHD7, ATCSLD3, KJK, CSLD3 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) AT5G16910 1858 / 0 ATCSLD2 cellulose-synthase like D2 (.1) AT4G38190 1606 / 0 ATCSLD4 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) AT1G02730 1491 / 0 SOS6, ATCSLD5 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) AT2G33100 1407 / 0 ATCSLD1 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1) AT1G32180 1253 / 0 ATCSLD6 CELLULOSE SYNTHASE LIKE D6, cellulose synthase-like D6 (.1) AT5G05170 850 / 0 IXR1, CEV1, ATH-B, ATCESA3, CESA3 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) AT2G25540 846 / 0 CESA10 cellulose synthase 10 (.1) AT4G18780 840 / 0 LEW2, IRX1, ATCESA8, CESA8 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) AT5G17420 825 / 0 ATCESA7, MUR10, IRX3 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038008 [exp] 2004 / 0 AT3G03050 1818 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10030453 [exp] 1592 / 0 AT3G03050 1584 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10013851 [exp] 1587 / 0 AT4G38190 1876 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10026568 [exp] 1555 / 0 AT4G38190 1868 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10022982 [exp] 1548 / 0 AT4G38190 1823 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10010024 [exp] 1498 / 0 AT1G02730 1806 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) Lus10002134 [exp] 1441 / 0 AT3G03050 1473 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10000755 [exp] 1340 / 0 AT2G33100 1590 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1) Lus10026609 [exp] 1329 / 0 AT3G03050 1326 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G082200 [exp] 1944 / 0 AT3G03050 1987 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.019G049700 [exp] 1941 / 0 AT3G03050 2020 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.009G170000 [exp] 1605 / 0 AT4G38190 1873 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Potri.001G136200 [exp] 1598 / 0 AT3G03050 1640 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.003G097100 [exp] 1591 / 0 AT3G03050 1610 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.004G208800 [exp] 1582 / 0 AT4G38190 1835 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Potri.014G125100 [exp] 1496 / 0 AT1G02730 1820 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) Potri.002G200300 [exp] 1473 / 0 AT1G02730 1813 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) Potri.003G177800 [exp] 1389 / 0 AT2G33100 1569 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1) Potri.001G050200 [exp] 1357 / 0 AT2G33100 1576 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF03552 [flax] [poplar] Cellulose_synt Cellulose synthase
Representative CDS sequence Show only first row Show all	>Lus10009248 pacid=23160157 polypeptide=Lus10009248 locus=Lus10009248.g ID=Lus10009248.BGIv1.0 annot-version=v1.0 ATGAACTACACCGTCCACATCCCTCCGACGCCGGACAACCAGCCTAGCACGGACCCTTCCATCTCCCAGAAGGTGGAGGAGCAGTACGTCTCCAGCTCCC TCTTCACCGGCGGCTTCAACAGCGTCACCCGTGCACATCTCATGGACAAGGTCACCGACTCCGAACAATCTAGCCACCCTCAGATGGCCGGAGCCAAGGG ATCCTGCTGCGCCATCCCTGGCTGCGACGCCAACGTCATGATCGACCAGCGCGGCGACGACATCCTCCCTTGCGACTGCGATTTTAAGATCTGCCGTGAC TGCTACGTCGACGCCGTCAAAGCCGGAGGTGCAACCTGCCCCGGCTGCAAGGATCCTTACAAGGATACTGAGCTCGACGAGGTCGCCGTCGACGACGATA ATTCCAATTCCCGCCCTCTTCCGCTCCCTCCCCCTGTCGCCACCATGTCGAAGATGGAGAGGCGCCTTTCCCTGATGAAATCTACCAAGTCCGGCCTCGT GAGGAGCCAGACTGCTGACTTCGACCACAACAGGTGGCTCTTTGAGACCAGAGGCACTTACGGCTACGGCAACGCTATCTGGACCAACGATGGTGGCTTT GGCGGCGGCAAGGATGACTCAGTTGCTGAGCCTAAGGAATTCATGTCCAAGCCATGGAGGCCTCTCACCCGTAAACTGAAGATACCAGCTGCCGTTATCA GCCCATACAGGCTTCTTGTCTTCATTCGAGTCATCGCTCTTGGTTTGTTTTTGTCATGGAGGGTACAAAATCCCAACAAGGAGGCTATGTGGCTGTGGGG GATGTCAGTTGTCTGCGAGCTTTGGTTTGCGTTTTCTTGGCTTCTTGATCAACTACCAAAGTTGTGTCCAATAAACCGTGCAACTGATCTAAACGTGTTG AAGGATAAATTCGAGACTCCCACCCTACGTAATCCAACAGGAAAATCCGATCTTCCGGGAGTAGATGTATTCGTCTCCACTGCGGATCCTGAGAAAGAAC CACCTCTTGTCACTGCAAACACCATCTTATCAATCTTAGCAGCTGAGTACCCTGTTGAAAAGCTTGCATGTTACGTCTCTGATGATGGCGGTGCACTTCT AACCTTTGAGGCCATGGCTGAAGCTGCAAGTTTTGCCAACATCTGGGTCCCCTTCTGCCGTAAACATGATATAGAGCCTAGAAATCCTGAGTCTTACTTT AGCCTGAAGAGAGATCCCTACAAGAACAAAGTGAAAGCAGACTTTGTCAAAGATCGCAGGCGACTAAAGCGCGAGTACGATGAGTTTAAGGTTCGAATTA ATGGTTTGCCTGATTCCATTCGACGACGATCTGATGCATATCATGCAAGGGAAGAAATCAAAGCATTGAAGCTTCAGAGGCAGAATAGGGCGGTGGAAGT TGAACCTGTTGAGACTGTGAAGATTCCCAAGGCGACATGGATGGCTGATGGTACCCACTGGCCTGGTACTTGGATGAATTCTGGCCCTGATCACTCCAAA GGAGACCATGCTGGGATTATCCAGGTGATGCTGAAACCACCCAGCGAGGAACCACTACACGGCAGCTCCGATGAAACCAAGACCTTGGACCTTACAGATG TTGATATACGTCTCCCACTCCTCGTCTACGTATCCCGCGAGAAGCGTCCTGGATATGATCACAACAAAAAGGCAGGAGCAATGAACGCTCTGGTTCGCGC ATCAGCAATCATGTCCAACGGTCCATTCATCCTCAACCTCGACTGCGACCACTACATCTACAACTCTCTAGCTCTTCGAGAAGGCATGTGCTTCATGATG GACCGAGGCGGCGACCGTCTCTGCTACGTTCAGTTCCCTCAAAGATTCGAAGGCATCGACCCTTCCGACCGATACGCAAATCACAACACCGTCTTCTTCG ACGTCAACATGCGTGCTCTCGACGGTCTAACGAGACCCGTCTATGTCGGAACCGGATGCCTCTTCAGAAGAATCGCTCTCTATGGCTTCGACCCTCCTCG AGCCAAAGAGGATAACCCAGGATGCTGTGGCAGCTGCTTCTCCTTCTCCAGCCGCAAGAAGAAGCATACGCCGGAAGAGAACAAGTCCTTGAGAATGGAG GATTCCGACGATGACGTAGAGATCATGAACTTGAACATGTCTTTCCTTCCCAAGAAGTTCGGCAACTCTACTTTCCTCATCGACTCAATCCCAGTAGCTG AATTCCAAGGCCGACCACTTGCAGACCATCCCGCCGTTAAAAACGGCCGTCCACCTGGCGCTCTCACCATCCCGCGAGATCTCCTGGATGCTTCCACAGT TGCGGAAGCAATTAGCGTGATTTCCTGCTGGTACGAGGAGAAGACCGAGTGGGGTCAACGAATCGGCTGGATCTACGGCTCCGTCACGGAAGACGTTGTA ACTGGCTACAGAATGCACAACAGAGGATGGAAATCCGTTTACTGCGTCACGAAACGTGACGCCTTCCGTGGAACTGCACCCATAAACTTAACGGACAGAC TCCACCAGGTGCTTCGTTGGGCTACAGGCTCAGTCGAAATCTTCTTCTCCAGAAACAACGCCTTACTAGCCAGTCCAAGAATGAAGCTTCTTCAAAGAAT AGCATACCTAAACGTCGGAATCTATCCATTCACCTCGTTCTTCCTCATTGTCTACTGCTTCCTACCAGCGCTGTCGTTATTCTCCGGACAGTTCATCGTG TCAACTCTCAACGTGACATTCTTGGCCTACTTACTCATCATAACGGTGACTCTATGCATGCTGGCGGTTCTCGAGATAAAATGGTCGGGGATTGAGTTGG AGGAATGGTGGAGGAACGAGCAGTTCTGGCTAATCGGCGGGACGAGCGCTCATCTTGCAGCGGTGTTGCAGGGATTGTTGAAGGTGGTGGCGGGGATTGA GATATCGTTCACTCTGACGTCGAAGTCGGGAGGGGATGACGTGGACGACGAGTTTGCTGATCTGTACATAGTGAAGTGGACGAGTTTGATGATACCGCCG ATAGTGATAATGATGGTGAACCTGATAGGGATAGCGGTGGGGTTGAGCAGGACGCTTTACAGTGTGATTCCGCAGTGGAGTAAGCTGCTGGGTGGGGTGT TCTTCAGTTTCTGGGTGCTGGCTCATCTTTATCCTTTTGCGAAAGGGTTGATGGGGAGGAGAGGAAGGACTCCTACGATTGTGTTTGTTTGGTCAGGGTT GATTGCCATCATCATATCTTTGCTTTGGGTGGCCATCAATCCTCCGTCTGATACTAACCAGATTGGTGGTTCGTTTCAGTTCCCCTGA
AA sequence Show only first row Show all	>Lus10009248 pacid=23160157 polypeptide=Lus10009248 locus=Lus10009248.g ID=Lus10009248.BGIv1.0 annot-version=v1.0 MNYTVHIPPTPDNQPSTDPSISQKVEEQYVSSSLFTGGFNSVTRAHLMDKVTDSEQSSHPQMAGAKGSCCAIPGCDANVMIDQRGDDILPCDCDFKICRD CYVDAVKAGGATCPGCKDPYKDTELDEVAVDDDNSNSRPLPLPPPVATMSKMERRLSLMKSTKSGLVRSQTADFDHNRWLFETRGTYGYGNAIWTNDGGF GGGKDDSVAEPKEFMSKPWRPLTRKLKIPAAVISPYRLLVFIRVIALGLFLSWRVQNPNKEAMWLWGMSVVCELWFAFSWLLDQLPKLCPINRATDLNVL KDKFETPTLRNPTGKSDLPGVDVFVSTADPEKEPPLVTANTILSILAAEYPVEKLACYVSDDGGALLTFEAMAEAASFANIWVPFCRKHDIEPRNPESYF SLKRDPYKNKVKADFVKDRRRLKREYDEFKVRINGLPDSIRRRSDAYHAREEIKALKLQRQNRAVEVEPVETVKIPKATWMADGTHWPGTWMNSGPDHSK GDHAGIIQVMLKPPSEEPLHGSSDETKTLDLTDVDIRLPLLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSLALREGMCFMM DRGGDRLCYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLTRPVYVGTGCLFRRIALYGFDPPRAKEDNPGCCGSCFSFSSRKKKHTPEENKSLRME DSDDDVEIMNLNMSFLPKKFGNSTFLIDSIPVAEFQGRPLADHPAVKNGRPPGALTIPRDLLDASTVAEAISVISCWYEEKTEWGQRIGWIYGSVTEDVV TGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSFFLIVYCFLPALSLFSGQFIV STLNVTFLAYLLIITVTLCMLAVLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVVAGIEISFTLTSKSGGDDVDDEFADLYIVKWTSLMIPP IVIMMVNLIGIAVGLSRTLYSVIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAIIISLLWVAINPPSDTNQIGGSFQFP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10009248 [exp]	0	1
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10004040 [exp]	1.0	0.9456
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10042497 [exp]	3.7	0.9315
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10009247 [exp]	4.1	0.8891
AT3G17440		ATNPSN13, NPSN1...	novel plant snare 13 (.1.2)		Lus10018338 [exp]	4.6	0.9255
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Lus10037458 [exp]	4.9	0.8821
AT1G27600		IRX9-L, I9H	IRREGULAR XYLEM 9-LIKE, IRREGU...		Lus10032817 [exp]	6.9	0.9204
AT1G23190		PGM3	phosphoglucomutase 3, Phosphog...		Lus10003712 [exp]	7.3	0.9041
AT4G30390			unknown protein		Lus10020378 [exp]	8.3	0.8447
AT1G50010		TUA2	tubulin alpha-2 chain (.1)		Lus10035422 [exp]	8.5	0.8966
AT1G27600		IRX9-L, I9H	IRREGULAR XYLEM 9-LIKE, IRREGU...		Lus10007692 [exp]	10.0	0.8981

Compare expression of checked genes

Lus10009248 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.