Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80620 202 / 1e-60 S15/NS1, RNA-binding protein (.1) AT1G15810 194 / 3e-57 S15/NS1, RNA-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038010 [exp] 571 / 0 AT1G80620 275 / 2e-88 S15/NS1, RNA-binding protein (.1) Lus10010090 [exp] 273 / 1e-87 AT1G15810 265 / 7e-85 S15/NS1, RNA-binding protein (.1) Lus10007211 [exp] 246 / 2e-73 AT1G02310 405 / 4e-134 endo-beta-mannanase 1, Glycosyl hydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G178800 [exp] 216 / 2e-65 AT1G80620 254 / 5e-80 S15/NS1, RNA-binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0600 [flax] [poplar] S15_NS1 PF00312 [flax] [poplar] Ribosomal_S15 Ribosomal protein S15
Representative CDS sequence Show only first row Show all	>Lus10009249 pacid=23160169 polypeptide=Lus10009249 locus=Lus10009249.g ID=Lus10009249.BGIv1.0 annot-version=v1.0 ATGGCTCTCACTCTCTCTAGAGCCAATCGGCGGTCACTCGCCAGTACTTCTCTAATCCACCAAATCATATCTCCCTCTCCACTTTCTTCTCCTTTATCCA CCGTCCCTCCCGGAAATGACAACACCTCCTCCTCCGCCGCCGGTGCCGATTCCCAACCTCAACCAAATACAGCCGCCTCTAACCTAAACGATGTCAAATC TACCCTCAGAGAAGATCAGCGCTCACCAAACAGACTCTATCCGCCTGCCAGAAACCCTAGCGGCGGTCCCTCCATGGCGAAACCGATCGCCGGAAAAGGA GCAACTCTGGGTAGTCCTATGAAGAATCTTTCCGAGTTCCGGAACCGATCTCCTCCTCCCTCTGGCAACAACAAGACTGCAGCGCAACGGAACAGAGTAT CGCTTGAAGACATTTACCATCGTAACGTACAGGACGCTGACGATGGCGGAAACCGCCCTCCGATGACTTTCGATACGATCAAGCAAAGCCTCAGGTCCCT AGTAACTAAAAACGCGAACAACTACGCCAAGGGAGATTCGGCGCGGTCGTGGAATTTCAGTAGTACGAATGGTACGAATTCTGTTGGATCGACGGTGATT AGTGGGGCTAGAGGAGGAGGAGGAGAAGGAGGAGGGGGAATGTGGATCAATTTTGAGAAGAGGTATAGCTATGAGGAATTGGGGGATTTGATGAAGAAAC TTCGGCCGGAGGAGAAGCAGAAAGGTGGAGGGAAGAAGGGATCTTTCTCGTTACAGGAGTTGAATGAGAGGTTGAGTAAGTTAAAGGAAATGGAGGAAGA GAAAAGTTCCAAATCGACGTTGTTGAGGCAGGGTTTCGAAGGTCTGGCGCTGATGGAAGAGCAAAAGAAGCAAGGACCAATCTACCAGCCAAGTATCTTG AGCCCGTCACCTCCTGAGTATACGATGCATCCTCCAAAAGACAAGTTAGTTGAGAAGTATTTCCATCCAGATAACATGTCCTCTCAGGAGAAAATGAAAA TTGAACTTGCTAAAGTTAGGGAAGAGTTCAAAATGAACGAGTCAGATTGCGGATCTGCTCGTGTTCAAGTTGCACAGCTTACAACGAAGATCAAGCATCT CTCTTCAGTTCTGCACAAGAAGGACAAGCATTCGAGGAAGGGTCTTCAGGAAATGGTGCAAAGGAGAAAGAAGTTGTTGAGGTATCTACGAAGAACCGAC TGGGACTCGTTCTGTTTCGTTCTGTCAAAACTCGGTCTTCGTGACAACCCGGACTACAAGAACTTGTGA
AA sequence Show only first row Show all	>Lus10009249 pacid=23160169 polypeptide=Lus10009249 locus=Lus10009249.g ID=Lus10009249.BGIv1.0 annot-version=v1.0 MALTLSRANRRSLASTSLIHQIISPSPLSSPLSTVPPGNDNTSSSAAGADSQPQPNTAASNLNDVKSTLREDQRSPNRLYPPARNPSGGPSMAKPIAGKG ATLGSPMKNLSEFRNRSPPPSGNNKTAAQRNRVSLEDIYHRNVQDADDGGNRPPMTFDTIKQSLRSLVTKNANNYAKGDSARSWNFSSTNGTNSVGSTVI SGARGGGGEGGGGMWINFEKRYSYEELGDLMKKLRPEEKQKGGGKKGSFSLQELNERLSKLKEMEEEKSSKSTLLRQGFEGLALMEEQKKQGPIYQPSIL SPSPPEYTMHPPKDKLVEKYFHPDNMSSQEKMKIELAKVREEFKMNESDCGSARVQVAQLTTKIKHLSSVLHKKDKHSRKGLQEMVQRRKKLLRYLRRTD WDSFCFVLSKLGLRDNPDYKNL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80620			S15/NS1, RNA-binding protein (...		Lus10009249 [exp]	0	1
AT1G80620			S15/NS1, RNA-binding protein (...		Lus10038010 [exp]	1.0	0.9425
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Lus10007242 [exp]	3.5	0.9375
AT5G14610			DEAD box RNA helicase family p...		Lus10014553 [exp]	4.7	0.9213
AT3G03420			Ku70-binding family protein (....		Lus10014579 [exp]	8.0	0.9204
AT1G29880			glycyl-tRNA synthetase / glyci...		Lus10029203 [exp]	8.4	0.9306
AT4G14300			RNA-binding (RRM/RBD/RNP motif...		Lus10011783 [exp]	11.2	0.9288
AT1G21480			Exostosin family protein (.1.2...		Lus10028632 [exp]	11.5	0.9193
AT1G32440		PKP3	plastidial pyruvate kinase 3 (...		Lus10000672 [exp]	12.2	0.9358
AT4G04790			Tetratricopeptide repeat (TPR)...		Lus10043070 [exp]	13.3	0.9181
AT4G14300			RNA-binding (RRM/RBD/RNP motif...		Lus10023740 [exp]	13.6	0.8973

Compare expression of checked genes

Lus10009249 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.