Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62010 1951 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038011 [exp] 2571 / 0 AT3G62010 1976 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G109900 [exp] 2112 / 0 AT3G62010 2006 / 0.0 unknown protein Potri.002G184400 [exp] 2097 / 0 AT3G62010 1966 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009251 pacid=23160201 polypeptide=Lus10009251 locus=Lus10009251.g ID=Lus10009251.BGIv1.0 annot-version=v1.0 ATGCTTCTTCCTTTCCTCCCTTCACTCTACATCAGAAGCCATTATTGTTGTGCTGCAGCTGAAGAACTCCCCGTTCCGCGATTCAGTCCTACAAGGGAAA GGAGAAGGAAATACGACGACGAGGACAAGTTGAGCTGCGTTCGAGACAGAAAATACCAGGGAGGTTTCTTCGGGGAGATGTCGATACCCAAGGAGCCAGA GCATGTTATGAAGCTCCGTGGTGGATCAGTCCTCGGAAAGAAGACCATTCTTAAGAGCGACCATTTCCCTGGCTGCCAGAACAAGCGCTTAACTCCTCCC ATCGATGGCGCCCCTAATTACCGCCAGGCTGACATCTTACCTGTTCATGGCGTTGCTATTCCAACTGTTGAGGGGATCCGCAATGTCATCAAGCACATAC GAGGTAGAAAAGATGGGAAGAGAGCTCAAATTCTGTGGTTTAACCTTCGCGAGGAACCGTTGATGTACATTAATGGACGTCCATTTGTTCTACGCGATGT AGAGAGGCCCTTTTCCAATCTGGAATATACGGGAATAAACAGGTTTAGGGTTGAACAAATGGAGGCTCGATTGAAGGAGGATATCTTGATGGAAGCTGCC AGATATGGCAATAAGATTCTTGTTACTGATGAATTACCAGACGGTCAAATGGTGGACCAATGGGAGCCAGTATCTAGTGATTCCGTCTATGAAGAATTAC AGGTGGAAGGTTACCACTTTGACTATGAGCGTGTTCCTATTACTGATGAAAAATCACCAGAGGAGACTGATTTTGATGTCTTAGTTGATAGAATCTACCG GACAGATTTGACTTCAGATATAATTTTCAATTGCCAAATGGGGCGTGGTCGCACAACAACTGGGATGGTGATAGCTACTTTGGTTTACCTTAACCGAATT GGATCTTCTGGTATCCCAAGATCCAATTCAGTTGGTAGAGTTTGTGACTCTGGTTCTGCTGTGAATGATAATGTTCTAAACTCCGAGGAGGCAATTCGTA GGGGAGAGTATGGAGTCATAAGAAGCCTGACACGAGTTCTAGAGGGTGGTGTTGAAGGGAAAAGACAGGTGGACAAAGTTATCGACAAGTGCGCCTCCAT GCAGAACCTGCGGGAAGCAATTGCCACTTACCGCAATAGTATTCTTCGTCAACCTGATGAGATGAAGAGGGAGGCATCACTTTCTTTTTTTGTGGAATAC TTGGAAAGATATTACTTCCTTATCTGCTTTGCTGTATACATCCACTCAGAGAGAGATGCCCTTCGTTCTAGTTCTTTTGGGCATAGCAGTTTTGCTGACT GGATGAAAGCACGTCCAGAGCTGTACAGCATTATTCGCAGACTGGTCCGGCGAGATCCAATGGGTGCCCTTGGATATGCCAGTTCAAAGCCGTCATTAAG GAAGATTGCTGAATCTGCTGATGGTCGTCCTTATGAGATGGGTGTTGTTGCTGCATCGAGGAATGGGGAGGTGCTAGGTAGTCAGACTGTTTTAAAAAGT GACCACTGTCCAGGTTGCCAAAATACACATTTACCAGAGAGGGTGGAGGGTGCACCAAATTTCAGAGAAGTTCCTGGATTTCCAGTTTATGGGGTTGCGA ATCCCACAATAGATGGTATTGTTTCAGTGATTAAGAGGATTGGCAGATCTAAAGGTTCTCGGCCAGTTTTTTGGCACAACATGAGGGAAGAGCCTGTTAT CTACATCAATGGAAAACCATTTGTCCTCCGTGAAGTCGAGAGACCATACAAAAACATGCTGGAGTATTCGGGAATTGATCGGAAAAGAGTGGAGAGAATG GAAGCTCGTCTGAAAGAAGATATCCTTAGAGAATCAGAACGTTATGGAGGTGCAATAATGGTCATTCATGAAACAGAGGATGGTCAAATCTTCGATGCCT GGGAGCACGTGAATTCTGAATCTGTGAAGACCCCACTGGAGGTCTTCAGGTGCTTAGAAGCCAATAGTTCTCCTGTTAAATATGCACGAGTGCCTATCAC TGATGGTAAAGCTCCCAAGAGTTCTGACTTCGACTTATTGGCATCAAACATTGCTTCTGCTCCCCAGGAAACTGCTTTTGTGTTCAATTGTCAGATGGGA AGGGGAAGAACAACCACAGGTACTGTTATCGCTTGCCTTGTAAAACTGAGAGTGGAATTTGGGAAGCCGATTAAAGTCTTGCACGATGATATAAACCATG ACGAGGAGGATACTGGTAGCTCAAGTGGAGAAGACACAGGAGGGAATTCAGGATCCACCCCTGATACTACTGAAATGATAACTGAGAGGGAGCAAGTCCG TGCCTTTGGCATTGACGATATCCTATTGCTGTGGAAGATAACGAGATTATTTGATAATGGAGTTGAATGCCGTGAGGCTTTGGATGCCATCATTGACAGA TGCTCTGCACTGCAGAACATTCGCCAAGCAGTTCTGCAATATAGGAAGGTGATTAACCAACAACATGTGGAGCCAAGAGTTCGAAGAGTGGCATTGAATC GTGGTGCTGAATACCTAGAGCGTTATTTCCGGTTGATTGCTTTTGCTGCTTATCTCGGTAGTGGAGCATTTGATGGATTCTGTGGACAAGGAGACTCAAG AATGACTTTCAAGAGTTGGCTACACCAAAGACCTGAGGTTCAAGCAATGAAATGGAGCATAAGATTGAGACCCGGGCGATTCTTCACTATCCCTGCGGCA TTAAGAGCACCTGAGGAATCTCAGCATGGAGATGCAGTAATGGAAGCTGCAATCAGGTCCCGTAGTGGTTCAGTTTTGGGGAAAGGCTCCATACTTAAAA TGTACTTCTTTCCTGGTCAGAGGACTTCCAGCCATATACAGATCCACGGGGCACCACACGTTTTCAAGGTGGATGGATACCCAGTTTATAGCATGGCAAC TCCAACTATTGCTGGTGCTAAGGAGATGCTAAAATATTTAGGAGCCAAGCCCAAGGTTGAGGGCTCGGCGACTCCCAAAGTGATATTGACTGACATCAGA GAAGAAGCTGTAGTATACATCAATGGAACACCTTTCGTCCTCAGAGAGTTAAATAAACCAGTGGATGCATTGAAACATGTCGGAATCACGGGACCACTGG TGGAAAGCATGGAAGCCAGACTAAAAGAAGACATAGTCTCGGAGGTGAGGCAGTCCGGTGGACGAATGCTTTTGCACCGTGAAGAGTATAATCCAGCTAC AAACCAGTCCAGTGTTGTCGGATATTGGGAAAATATAGTTGCGGAGGACGTAAAGACACCTGCTGAGGTGTATGCTGCGCTGGAGGCCGAGGGTTATTGT TTAGCATACAGGAGGATACCATTGACACGTGAAAAGGAAGCTGTGGCTTCTGATGTTGATGCTATCCAGGATCGTAAAGATGATAATGCAGGGTATTACC TTTTCGTTTCACACACCGGGTTTGGAGGAGTGGCCTATGCAATGGCAATCATTTGTACTCGACTCGGAGCAGAAGGAAATTTTGTCTCGGACATTGGACC ACAGCTGTCTGTTCCAGATTCTCTTCCTACTGTAGATGGGAACTTAACGTCTCAATCGTCAGATGAAGAAACTCTTAGAATGGGTGACTATCGAGACATA CTAAGCCTTACGCGAGTTATCATGTATGGTCCAAAGAGCAAGGCGGATGTCGACATTGTTATAGAGAAGTGTGCAGGAGCAGGACATTTGCGAGATGACA TCTTCCGCTACACCAACAAACTCCGTAACTTCTGCGATGGAGATGATGAGCGGCGTGCACACCTCATGGATATGGGCATTAAGGCTTTAAGGCGGTACTT CTATCTGATAACATTCAGATCATACCTATACAGCACGAGGCCGGCGGAGGTGAGATTCGAAGAGTGGATGAAGGGAAGGCCTGAGCTGGGAAATCTCTGC AATAATCTGAGGATAGATAAATGA
AA sequence Show only first row Show all	>Lus10009251 pacid=23160201 polypeptide=Lus10009251 locus=Lus10009251.g ID=Lus10009251.BGIv1.0 annot-version=v1.0 MLLPFLPSLYIRSHYCCAAAEELPVPRFSPTRERRRKYDDEDKLSCVRDRKYQGGFFGEMSIPKEPEHVMKLRGGSVLGKKTILKSDHFPGCQNKRLTPP IDGAPNYRQADILPVHGVAIPTVEGIRNVIKHIRGRKDGKRAQILWFNLREEPLMYINGRPFVLRDVERPFSNLEYTGINRFRVEQMEARLKEDILMEAA RYGNKILVTDELPDGQMVDQWEPVSSDSVYEELQVEGYHFDYERVPITDEKSPEETDFDVLVDRIYRTDLTSDIIFNCQMGRGRTTTGMVIATLVYLNRI GSSGIPRSNSVGRVCDSGSAVNDNVLNSEEAIRRGEYGVIRSLTRVLEGGVEGKRQVDKVIDKCASMQNLREAIATYRNSILRQPDEMKREASLSFFVEY LERYYFLICFAVYIHSERDALRSSSFGHSSFADWMKARPELYSIIRRLVRRDPMGALGYASSKPSLRKIAESADGRPYEMGVVAASRNGEVLGSQTVLKS DHCPGCQNTHLPERVEGAPNFREVPGFPVYGVANPTIDGIVSVIKRIGRSKGSRPVFWHNMREEPVIYINGKPFVLREVERPYKNMLEYSGIDRKRVERM EARLKEDILRESERYGGAIMVIHETEDGQIFDAWEHVNSESVKTPLEVFRCLEANSSPVKYARVPITDGKAPKSSDFDLLASNIASAPQETAFVFNCQMG RGRTTTGTVIACLVKLRVEFGKPIKVLHDDINHDEEDTGSSSGEDTGGNSGSTPDTTEMITEREQVRAFGIDDILLLWKITRLFDNGVECREALDAIIDR CSALQNIRQAVLQYRKVINQQHVEPRVRRVALNRGAEYLERYFRLIAFAAYLGSGAFDGFCGQGDSRMTFKSWLHQRPEVQAMKWSIRLRPGRFFTIPAA LRAPEESQHGDAVMEAAIRSRSGSVLGKGSILKMYFFPGQRTSSHIQIHGAPHVFKVDGYPVYSMATPTIAGAKEMLKYLGAKPKVEGSATPKVILTDIR EEAVVYINGTPFVLRELNKPVDALKHVGITGPLVESMEARLKEDIVSEVRQSGGRMLLHREEYNPATNQSSVVGYWENIVAEDVKTPAEVYAALEAEGYC LAYRRIPLTREKEAVASDVDAIQDRKDDNAGYYLFVSHTGFGGVAYAMAIICTRLGAEGNFVSDIGPQLSVPDSLPTVDGNLTSQSSDEETLRMGDYRDI LSLTRVIMYGPKSKADVDIVIEKCAGAGHLRDDIFRYTNKLRNFCDGDDERRAHLMDMGIKALRRYFYLITFRSYLYSTRPAEVRFEEWMKGRPELGNLC NNLRIDK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62010			unknown protein		Lus10009251 [exp]	0	1
AT4G15240			Protein of unknown function (D...		Lus10027152 [exp]	2.0	0.8674
AT5G51690		ACS12	1-amino-cyclopropane-1-carboxy...		Lus10038899 [exp]	2.4	0.8852
AT5G26570		ATGWD3, OK1, PW...	PHOSPHOGLUCAN WATER DIKINASE, ...		Lus10041275 [exp]	2.8	0.8876
AT3G54660		ATGR2, EMB2360,...	glutathione reductase (.1)		Lus10018770 [exp]	7.1	0.8670
AT3G57300		ATINO80	INO80 ortholog (.1.2)		Lus10035436 [exp]	15.4	0.8722
AT1G13040			Pentatricopeptide repeat (PPR-...		Lus10011646 [exp]	16.2	0.8472
AT5G13260			unknown protein		Lus10001801 [exp]	16.9	0.8303
AT1G10760		GWD1, GWD, SOP1...	STARCH EXCESS 1, Pyruvate phos...		Lus10013044 [exp]	19.0	0.8342
AT3G61780		EMB1703	embryo defective 1703 (.1)		Lus10004004 [exp]	24.2	0.8212
AT2G25320			TRAF-like family protein (.1)		Lus10001490 [exp]	24.7	0.8582

Compare expression of checked genes

Lus10009251 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.