Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G09990 258 / 4e-90 Ribosomal protein S5 domain 2-like superfamily protein (.1) AT5G18380 258 / 5e-90 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3) AT3G04230 243 / 5e-84 Ribosomal protein S5 domain 2-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038012 [exp] 306 / 9e-109 AT2G09990 258 / 5e-90 Ribosomal protein S5 domain 2-like superfamily protein (.1) Lus10035133 [exp] 290 / 1e-102 AT2G09990 258 / 4e-90 Ribosomal protein S5 domain 2-like superfamily protein (.1) Lus10031970 [exp] 290 / 1e-102 AT2G09990 258 / 4e-90 Ribosomal protein S5 domain 2-like superfamily protein (.1) Lus10034378 [exp] 288 / 7e-102 AT5G18380 261 / 4e-91 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3) Lus10012599 [exp] 286 / 4e-101 AT5G18380 261 / 4e-91 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G304700 [exp] 274 / 3e-96 AT2G09990 267 / 9e-94 Ribosomal protein S5 domain 2-like superfamily protein (.1) Potri.008G150000 [exp] 273 / 4e-96 AT2G09990 262 / 1e-91 Ribosomal protein S5 domain 2-like superfamily protein (.1) Potri.010G091000 [exp] 272 / 1e-95 AT2G09990 260 / 7e-91 Ribosomal protein S5 domain 2-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [flax] [poplar] S5 PF00380 [flax] [poplar] Ribosomal_S9 Ribosomal protein S9/S16
Representative CDS sequence Show only first row Show all	>Lus10009252 pacid=23160198 polypeptide=Lus10009252 locus=Lus10009252.g ID=Lus10009252.BGIv1.0 annot-version=v1.0 ATGGCGGCGCCGGCAGCAACAGGAGCATCGCCGATCGAGTCAGTCCAGTGCTTCGGCCGCAAGAAGACCGCGGTGGCCGTCACCCACTGCAAGAGAGGAA GAGGCCTGATCAAGCTCAACGGTACTCCCATCGAGCTCGTGGAGCCCGAGATCCTCCGCTTCAAGGCCGTGGAGCCGATCCTTCTCCTCGGACGTCAGCG CTTCAGCGGCGTCGACATGAGGATCCGCGTCAAGGGAGGAGGGCACACTTCCCAGATCTACGCCATTCGTCAGAGCATCGCCAAGGCGCTTGTAGCTTTC TACCAGAAGTTCGTCGACGAGCAGAGCAAGAAGGAGATCAAAGACCTTCTCATCAGGTACGACAGGACTCTTCTGGTCGCTGATCCGAGGCGTTGCGAGC CTAAGAAGTTCGGTGGTCGTGGTGCCCGTTCCAGGTTCCAGAAGAGTTACCGTTGA
AA sequence Show only first row Show all	>Lus10009252 pacid=23160198 polypeptide=Lus10009252 locus=Lus10009252.g ID=Lus10009252.BGIv1.0 annot-version=v1.0 MAAPAATGASPIESVQCFGRKKTAVAVTHCKRGRGLIKLNGTPIELVEPEILRFKAVEPILLLGRQRFSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAF YQKFVDEQSKKEIKDLLIRYDRTLLVADPRRCEPKKFGGRGARSRFQKSYR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G09990			Ribosomal protein S5 domain 2-...		Lus10009252 [exp]	0	1
AT3G10950			Zinc-binding ribosomal protein...		Lus10006414 [exp]	4.8	0.8292
AT5G56940			Ribosomal protein S16 family p...		Lus10014281 [exp]	5.5	0.7873
AT1G77940			Ribosomal protein L7Ae/L30e/S1...		Lus10027926 [exp]	8.0	0.8157
AT3G22660			rRNA processing protein-relate...		Lus10031120 [exp]	9.3	0.8107
AT5G02960			Ribosomal protein S12/S23 fami...		Lus10023172 [exp]	10.5	0.8019
AT2G31610			Ribosomal protein S3 family pr...		Lus10033442 [exp]	10.8	0.8101
AT5G20920		EIF2 BETA, EMB1...	embryo defective 1401, eukaryo...		Lus10012186 [exp]	14.1	0.7675
AT3G10090			Nucleic acid-binding, OB-fold-...		Lus10029320 [exp]	14.1	0.7902
AT3G11510			Ribosomal protein S11 family p...		Lus10014220 [exp]	16.5	0.7991
AT3G16780			Ribosomal protein L19e family ...		Lus10023388 [exp]	16.6	0.7834

Compare expression of checked genes

Lus10009252 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.