Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01630 405 / 1e-144 ATEXP17, ATHEXPALPHA1.13, ATEXPA17 EXPANSIN 17, expansin A17 (.1) AT5G05290 313 / 3e-108 ATHEXPALPHA1.12, ATEXP2, ATEXPA2 EXPANSIN 2, expansin A2 (.1) AT2G39700 310 / 3e-107 ATHEXPALPHA1.6, ATEXP4, ATEXPA4 expansin A4 (.1) AT2G40610 310 / 4e-107 ATHEXPALPHA1.11, ATEXP8, ATEXPA8 expansin A8 (.1) AT1G20190 306 / 1e-105 ATHEXPALPHA1.14, ATEXP11, ATEXPA11 EXPANSIN 11, expansin 11 (.1) AT5G56320 303 / 2e-104 ATHEXPALPHA1.5, ATEXP14, ATEXPA14 EXPANSIN 14, expansin A14 (.1) AT2G37640 302 / 7e-104 ATHEXPALPHA1.9, ATEXP3, ATEXPA3, EXP3 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) AT3G55500 302 / 9e-104 ATHEXPALPHA1.7, ATEXP16, ATEXPA16 EXPANSIN 16, expansin A16 (.1) AT2G03090 301 / 2e-103 ATHEXPALPHA1.3, ATEXP15, ATEXPA15 EXPANSIN 15, expansin A15 (.1) AT1G69530 301 / 4e-103 ATHEXPALPHA1.2, AT-EXP1, ATEXP1, ATEXPA1, EXP1 EXPANSIN 1, expansin A1 (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038013 [exp] 495 / 4e-180 AT4G01630 405 / 1e-144 EXPANSIN 17, expansin A17 (.1) Lus10007205 [exp] 432 / 5e-155 AT4G01630 400 / 2e-142 EXPANSIN 17, expansin A17 (.1) Lus10034548 [exp] 330 / 6e-115 AT1G20190 400 / 1e-142 EXPANSIN 11, expansin 11 (.1) Lus10021845 [exp] 330 / 1e-114 AT1G20190 397 / 1e-141 EXPANSIN 11, expansin 11 (.1) Lus10017256 [exp] 317 / 7e-110 AT1G20190 378 / 5e-134 EXPANSIN 11, expansin 11 (.1) Lus10034227 [exp] 311 / 2e-107 AT2G40610 416 / 7e-149 expansin A8 (.1) Lus10023407 [exp] 311 / 2e-107 AT2G39700 445 / 3e-160 expansin A4 (.1) Lus10040286 [exp] 310 / 8e-107 AT2G39700 447 / 4e-161 expansin A4 (.1) Lus10020257 [exp] 305 / 5e-105 AT2G03090 349 / 2e-122 EXPANSIN 15, expansin A15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G184700 [exp] 424 / 4e-152 AT4G01630 394 / 4e-140 EXPANSIN 17, expansin A17 (.1) Potri.006G108000 [exp] 332 / 1e-115 AT2G40610 379 / 2e-134 expansin A8 (.1) Potri.016G135200 [exp] 323 / 4e-112 AT2G40610 400 / 6e-143 expansin A8 (.1) Potri.005G244100 [exp] 322 / 9e-112 AT1G20190 404 / 3e-144 EXPANSIN 11, expansin 11 (.1) Potri.008G057100 [exp] 320 / 8e-111 AT2G39700 459 / 6e-166 expansin A4 (.1) Potri.001G001100 [exp] 318 / 3e-110 AT2G03090 375 / 5e-133 EXPANSIN 15, expansin A15 (.1) Potri.002G017900 [exp] 317 / 8e-110 AT1G20190 408 / 9e-146 EXPANSIN 11, expansin 11 (.1) Potri.010G202500 [exp] 316 / 3e-109 AT2G39700 473 / 2e-171 expansin A4 (.1) Potri.019G057500 [exp] 311 / 1e-107 AT2G40610 374 / 2e-132 expansin A8 (.1) Potri.009G031800 [exp] 310 / 6e-107 AT2G39700 453 / 1e-163 expansin A4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF01357 [flax] [poplar] Expansin_C Expansin C-terminal domain CL0199 [flax] [poplar] DPBB PF03330 [flax] [poplar] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Lus10009253 pacid=23160174 polypeptide=Lus10009253 locus=Lus10009253.g ID=Lus10009253.BGIv1.0 annot-version=v1.0 ATGGCGTCTAAAGCTTTCGCCTTCAGCATTTATGTCGCCGTCGGGCAACTGCTGCTGCTGCTGTTCACAAACTTCCGGCCAGCCTCCGCAGCATGGCTCA GAGCCCATGCCACTTTCTACGGAGGCAGCGACGCTTCCGGTACTATGGGCGGAGCTTGCGGGTATGGGAATCTGTACACGGATGGTTACGGGACCAACAC TGCGGCGCTAAGCACCGCACTTTTCAACGACGGTAAATCCTGCGGTGGTTGCTATCAAATGGTCTGCGACGGCACTCAAGTTCCGCAGTGGTGCCGACGA GGAACTTACATCACCGTCACTGCCACTAATCTCTGCCCTCCCAACTACAATCTTCCCAATGACGATGGCGGGTGGTGTAACCCTCCCCGCCCGCATTTTG ACTTGTCTCAACCCGCCTTCCTCACCATTGCTCAATACAAAGCCGGAATCGTCCCCATTTTCTACCGGAGGGTTGGGTGTAGAAGGAGTGGAGGCATTAG GTTTACAATCAACGGTAGGAGCTACTTCGAATTGGTCTTGATATCCAATGTCGGAGGAGTCGGGGAAATTTCAATGGTTTGGGTGAGAGGTTCAAGAACC AACAAGTGGGAATCGATGTCGAGAAATTGGGGATCCAACTGGCAGAGCTTAACCTACCTCACTGGTCAAACTCTATCCTTCCGACTTCAAGGCAGTAACG GTCAGATTCGCACCGCTCTCAATGTCGTCCCTTCGAATTGGCAGTTTGGCCAGTCGTTCAAATCCAACATTCAATTCTGA
AA sequence Show only first row Show all	>Lus10009253 pacid=23160174 polypeptide=Lus10009253 locus=Lus10009253.g ID=Lus10009253.BGIv1.0 annot-version=v1.0 MASKAFAFSIYVAVGQLLLLLFTNFRPASAAWLRAHATFYGGSDASGTMGGACGYGNLYTDGYGTNTAALSTALFNDGKSCGGCYQMVCDGTQVPQWCRR GTYITVTATNLCPPNYNLPNDDGGWCNPPRPHFDLSQPAFLTIAQYKAGIVPIFYRRVGCRRSGGIRFTINGRSYFELVLISNVGGVGEISMVWVRGSRT NKWESMSRNWGSNWQSLTYLTGQTLSFRLQGSNGQIRTALNVVPSNWQFGQSFKSNIQF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01630		ATEXP17, ATHEXP...	EXPANSIN 17, expansin A17 (.1)		Lus10009253 [exp]	0	1
AT4G01630		ATEXP17, ATHEXP...	EXPANSIN 17, expansin A17 (.1)		Lus10038013 [exp]	1.0	0.9422
AT5G66870	AS2	LBD36, ASL1	LATERAL ORGAN BOUNDARIES DOMAI...		Lus10022463 [exp]	3.5	0.9374
AT1G02360			Chitinase family protein (.1)		Lus10038026 [exp]	3.6	0.9067
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10035255 [exp]	9.5	0.9257
AT1G28510			Optic atrophy 3 protein (OPA3)...		Lus10005273 [exp]	10.2	0.8947
AT3G52190		AtPHF1, PHF1	phosphate transporter traffic ...		Lus10038651 [exp]	10.5	0.9084
AT2G30340	AS2	LBD13	LOB domain-containing protein ...		Lus10034208 [exp]	13.1	0.8834
AT4G26900		HISN4, HISHF, A...	HIS HF (.1)		Lus10043113 [exp]	18.4	0.9223
AT4G26910			Dihydrolipoamide succinyltrans...		Lus10032633 [exp]	18.5	0.9173
AT1G70560		CKRC1, WEI8, TA...	WEAK ETHYLENE INSENSITIVE 8, S...		Lus10006199 [exp]	18.7	0.9103

Compare expression of checked genes

Lus10009253 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.