Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62020 302 / 4e-105 GLP10 germin-like protein 10 (.1.2) AT1G02335 285 / 7e-98 GL22 germin-like protein subfamily 2 member 2 precursor (.1) AT1G09560 284 / 2e-97 GLP5 germin-like protein 5 (.1) AT5G26700 246 / 7e-83 RmlC-like cupins superfamily protein (.1) AT3G05930 228 / 2e-75 GLP8 germin-like protein 8 (.1) AT1G18980 192 / 1e-61 RmlC-like cupins superfamily protein (.1) AT1G18970 185 / 1e-58 GLP4 germin-like protein 4 (.1) AT5G39160 176 / 8e-55 RmlC-like cupins superfamily protein (.1.2.3) AT5G39130 175 / 1e-54 RmlC-like cupins superfamily protein (.1) AT5G39190 175 / 1e-54 ATGER2, GLP2A GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038014 [exp] 350 / 1e-123 AT3G62020 327 / 5e-115 germin-like protein 10 (.1.2) Lus10032017 [exp] 205 / 2e-65 AT3G05950 252 / 5e-84 RmlC-like cupins superfamily protein (.1) Lus10032016 [exp] 203 / 2e-65 AT5G39160 264 / 3e-90 RmlC-like cupins superfamily protein (.1.2.3) Lus10032015 [exp] 197 / 4e-63 AT5G39160 262 / 3e-89 RmlC-like cupins superfamily protein (.1.2.3) Lus10035186 [exp] 196 / 7e-63 AT5G39190 265 / 2e-90 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Lus10035280 [exp] 195 / 2e-62 AT3G05950 252 / 2e-85 RmlC-like cupins superfamily protein (.1) Lus10035278 [exp] 195 / 2e-62 AT3G05950 254 / 3e-86 RmlC-like cupins superfamily protein (.1) Lus10035185 [exp] 194 / 3e-62 AT5G39160 265 / 2e-90 RmlC-like cupins superfamily protein (.1.2.3) Lus10034254 [exp] 193 / 1e-61 AT5G39160 251 / 6e-85 RmlC-like cupins superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G110400 [exp] 315 / 1e-109 AT3G62020 328 / 2e-115 germin-like protein 10 (.1.2) Potri.002G184900 [exp] 312 / 1e-108 AT3G62020 332 / 3e-117 germin-like protein 10 (.1.2) Potri.005G001300 [exp] 294 / 2e-101 AT3G62020 309 / 5e-108 germin-like protein 10 (.1.2) Potri.013G000500 [exp] 290 / 8e-100 AT1G09560 311 / 1e-108 germin-like protein 5 (.1) Potri.015G068200 [exp] 209 / 4e-68 AT1G18980 247 / 2e-83 RmlC-like cupins superfamily protein (.1) Potri.011G163800 [exp] 188 / 7e-60 AT5G39130 255 / 1e-86 RmlC-like cupins superfamily protein (.1) Potri.011G163216 [exp] 188 / 7e-60 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G163300 [exp] 188 / 7e-60 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G163200 [exp] 187 / 1e-59 AT3G05950 266 / 5e-91 RmlC-like cupins superfamily protein (.1) Potri.011G162932 [exp] 187 / 2e-59 AT3G05950 268 / 1e-91 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10009254 pacid=23160164 polypeptide=Lus10009254 locus=Lus10009254.g ID=Lus10009254.BGIv1.0 annot-version=v1.0 ATGGCTGCCTCCACCGCCGCCGCCACCCCCGCCCCCCCCCCCCCGCCGCTCTTCCCTCCCTCCTCTTCTTCTCCGCCATCTCCGCCGTCACATTCGCCTC CGACCCCGACCTGCTCCAGGACGTCTGCGTCGCCGACACCTCCTCCGGGACTCAGCGAGTCAAATCGAATCCCTATAATTGAATTTTTTTTGCCTGCAGG ACCTAAACTGAACGGATTCCCCTGCAAGCCGGACGCCAACGTGACCGCCGCCGACTTCTTCTTTGCCGGGATCGCGAATCCAGGCGTGGTGAACAACTCC TTCGGGTCGCTAGTCACGGGCGCGAATGTCGAGAAGATCCCGGGGCTGAACACGCTAGGAGTCTCCATGTCGAGGATCGATTACGCTCCCGATGGTTTGA ACCCGCCGCACACGCACCCACGCGCCACCGAGATTGTGTTCGTCTTGGAAGGCGAGCTGGACGTCGGGTTCATAACCACCTCCAACAAGCTGGTGTCGAA GTCGCTGAAGAAGGGGGAAGTGTTTGTATTCCCGAGAGGGTTAGTCCACTTCCAGAAGAACAACGGGAAGAAGCCGGCGGCGGTAATCGCCGGATTCAAC AGCCAGCTCCCCGGGACGCAGTCGCTGGCGGCGACTCTGTTCTCGGCGACGCCGGCGGTGCCGGATAATGTTCTGACGAAGGCGTTCCAGATCGGGACTA AGGAAGTTGAGAAGATTAAGTCCAAGTTTGCTCCTAAGAAATGA
AA sequence Show only first row Show all	>Lus10009254 pacid=23160164 polypeptide=Lus10009254 locus=Lus10009254.g ID=Lus10009254.BGIv1.0 annot-version=v1.0 MAASTAAATPAPPPPPLFPPSSSSPPSPPSHSPPTPTCSRTSASPTPPPGLSESNRIPIIEFFLPAGPKLNGFPCKPDANVTAADFFFAGIANPGVVNNS FGSLVTGANVEKIPGLNTLGVSMSRIDYAPDGLNPPHTHPRATEIVFVLEGELDVGFITTSNKLVSKSLKKGEVFVFPRGLVHFQKNNGKKPAAVIAGFN SQLPGTQSLAATLFSATPAVPDNVLTKAFQIGTKEVEKIKSKFAPKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62020		GLP10	germin-like protein 10 (.1.2)		Lus10009254 [exp]	0	1
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10032929 [exp]	1.0	0.9860
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10043156 [exp]	3.9	0.9840
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10032593 [exp]	4.0	0.9851
AT3G62020		GLP10	germin-like protein 10 (.1.2)		Lus10038014 [exp]	5.0	0.9831
AT2G03200			Eukaryotic aspartyl protease f...		Lus10025702 [exp]	5.3	0.9833
AT5G07220		ATBAG3	BCL-2-associated athanogene 3 ...		Lus10023279 [exp]	5.3	0.9825
AT1G58070			unknown protein		Lus10019953 [exp]	6.0	0.9830
AT1G32100		ATPRR1	pinoresinol reductase 1 (.1)		Lus10012143 [exp]	6.9	0.9820
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Lus10018005 [exp]	7.1	0.9807
AT2G36210			SAUR-like auxin-responsive pro...		Lus10021341 [exp]	7.3	0.9562

Compare expression of checked genes

Lus10009254 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.