Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62030 164 / 4e-51 CYP20-3, ROC4 cyclophilin 20-3, rotamase CYP 4 (.1.2.3) AT5G13120 149 / 3e-45 Pnsl5, ATCYP20-2 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) AT4G38740 137 / 9e-42 ROC1 rotamase CYP 1 (.1) AT2G21130 137 / 2e-41 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT2G29960 135 / 3e-40 CYP19-4, ATCYP5, CYP5 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) AT5G58710 134 / 4e-40 ROC7 rotamase CYP 7 (.1) AT3G56070 130 / 6e-39 ROC2 rotamase cyclophilin 2 (.1.2) AT2G16600 129 / 2e-38 ROC3 rotamase CYP 3 (.1.2) AT4G34870 125 / 1e-36 ATCYP1, ROC5 ARABIDOPSIS THALIANA CYCLOPHILIN 1, rotamase cyclophilin 5 (.1) AT3G55920 119 / 7e-34 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038015 [exp] 333 / 7e-119 AT3G62030 161 / 5e-50 cyclophilin 20-3, rotamase CYP 4 (.1.2.3) Lus10011330 [exp] 152 / 3e-46 AT5G13120 336 / 2e-117 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) Lus10003138 [exp] 151 / 2e-45 AT5G13120 333 / 2e-115 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) Lus10040666 [exp] 135 / 4e-40 AT5G58710 347 / 2e-123 rotamase CYP 7 (.1) Lus10018238 [exp] 134 / 5e-40 AT2G29960 348 / 4e-124 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Lus10007579 [exp] 132 / 2e-39 AT2G16600 311 / 2e-110 rotamase CYP 3 (.1.2) Lus10012167 [exp] 132 / 2e-39 AT2G16600 313 / 4e-111 rotamase CYP 3 (.1.2) Lus10038315 [exp] 132 / 5e-39 AT2G29960 313 / 1e-109 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Lus10017258 [exp] 128 / 6e-38 AT2G16600 308 / 6e-109 rotamase CYP 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G185200 [exp] 181 / 1e-57 AT3G62030 293 / 2e-100 cyclophilin 20-3, rotamase CYP 4 (.1.2.3) Potri.001G060200 [exp] 149 / 5e-45 AT5G13120 297 / 7e-102 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) Potri.003G167700 [exp] 147 / 2e-44 AT5G13120 277 / 5e-94 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) Potri.009G046500 [exp] 133 / 2e-39 AT2G29960 323 / 4e-114 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Potri.004G168800 [exp] 132 / 2e-39 AT2G16600 278 / 4e-97 rotamase CYP 3 (.1.2) Potri.009G130100 [exp] 132 / 2e-39 AT2G21130 279 / 1e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.010G189000 [exp] 133 / 3e-39 AT3G55920 303 / 4e-105 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.005G240200 [exp] 128 / 6e-38 AT2G16600 276 / 2e-96 rotamase CYP 3 (.1.2) Potri.002G021500 [exp] 128 / 7e-38 AT2G16600 278 / 2e-97 rotamase CYP 3 (.1.2) Potri.001G251700 [exp] 127 / 3e-37 AT5G58710 313 / 6e-110 rotamase CYP 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0475 [flax] [poplar] Cyclophil-like PF00160 [flax] [poplar] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Lus10009255 pacid=23160190 polypeptide=Lus10009255 locus=Lus10009255.g ID=Lus10009255.BGIv1.0 annot-version=v1.0 ATGGCGTCCACCACCTTCTCCCTCCAGACCTCTCGCATCCTACTTCCGGGAAGTTGCAGCCCAAATTCCCGGTTGGGTTGTTTGCCGGCGAATTCGGTTT CATCAAGCCGCATTGGGAAACCATTGGCGTCAGAAGCTGGTTTCCCTTTCCTGCGGCTCTCTTCGCCTTCTTCTATTATTAAGCAGAGGAGGAAGCCGTT TGTTGTTAACTCCGCAGCCAGCGGAACTGGAGGAGTCAGTATCTATGGTGAAAAATTTGAGGATGAGAGCTTTGACTTGAAGCATGTTGGTCCTGGAGTG TTGAGCATGGCTAATGCTGGCCCTAATACCAATGGAAGCCAATTTTTCATTTGCACTGTGAAGACTCCATGGTTGGACAATAGACACGTGGTGTTTGGAA ATGTCATTGATGGAATGGACATTGTACGGAAGCTCGAAGCTGTAGAGACCAGCCGGTCAGATATCCCTCGGATGCCCTGCAGAATTGTCGATTGTGGGGA GCTGCCGTTCGAATCATAG
AA sequence Show only first row Show all	>Lus10009255 pacid=23160190 polypeptide=Lus10009255 locus=Lus10009255.g ID=Lus10009255.BGIv1.0 annot-version=v1.0 MASTTFSLQTSRILLPGSCSPNSRLGCLPANSVSSSRIGKPLASEAGFPFLRLSSPSSIIKQRRKPFVVNSAASGTGGVSIYGEKFEDESFDLKHVGPGV LSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGNVIDGMDIVRKLEAVETSRSDIPRMPCRIVDCGELPFES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62030		CYP20-3, ROC4	cyclophilin 20-3, rotamase CYP...		Lus10009255 [exp]	0	1
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10037012 [exp]	3.2	0.9382
AT5G45930		CHLI-2, CHLI2	magnesium chelatase i2 (.1)		Lus10025423 [exp]	4.2	0.9430
AT1G56050			GTP-binding protein-related (....		Lus10031789 [exp]	5.7	0.9335
AT1G48350		EMB3105	EMBRYO DEFECTIVE 3105, Ribosom...		Lus10039092 [exp]	14.8	0.9323
AT2G33800		EMB3113	EMBRYO DEFECTIVE 3113, Ribosom...		Lus10025445 [exp]	16.4	0.9267
AT3G54210			Ribosomal protein L17 family p...		Lus10000382 [exp]	20.0	0.9239
AT4G33030		SQD1	sulfoquinovosyldiacylglycerol ...		Lus10013513 [exp]	20.1	0.8770
AT1G78630		EMB1473	embryo defective 1473, Ribosom...		Lus10005553 [exp]	20.1	0.9314
AT1G50900		LTD, GDC1	LHCP translocation defect, Gra...		Lus10011151 [exp]	20.7	0.9288
AT5G13510		EMB3136	EMBRYO DEFECTIVE 3136, Ribosom...		Lus10030298 [exp]	21.0	0.9141

Compare expression of checked genes

Lus10009255 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.