Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62040 364 / 1e-128 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G59480 279 / 1e-94 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT5G02230 262 / 4e-88 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT5G59490 258 / 2e-86 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT2G32150 229 / 3e-75 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038016 [exp] 485 / 2e-175 AT3G62040 363 / 6e-127 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10024382 [exp] 280 / 1e-94 AT5G02230 394 / 5e-139 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10010848 [exp] 279 / 3e-94 AT5G02230 394 / 7e-139 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10016518 [exp] 270 / 4e-91 AT5G59480 383 / 5e-135 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10040786 [exp] 268 / 1e-89 AT5G59480 382 / 4e-134 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10004971 [exp] 266 / 2e-89 AT5G59480 392 / 1e-138 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10004914 [exp] 242 / 3e-80 AT2G32150 338 / 6e-118 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10028107 [exp] 241 / 2e-79 AT5G02230 369 / 4e-129 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10010537 [exp] 237 / 2e-78 AT2G32150 338 / 7e-118 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G110800 [exp] 383 / 2e-135 AT3G62040 356 / 8e-125 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.002G185300 [exp] 379 / 1e-133 AT3G62040 360 / 5e-126 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.006G086900 [exp] 283 / 9e-96 AT5G02230 402 / 4e-142 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.001G242300 [exp] 279 / 1e-94 AT5G59480 409 / 2e-145 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.009G033500 [exp] 273 / 4e-91 AT5G59480 361 / 4e-125 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.010G089300 [exp] 248 / 1e-82 AT2G32150 317 / 9e-110 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.008G151700 [exp] 236 / 6e-78 AT2G32150 319 / 2e-110 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Lus10009256 pacid=23160195 polypeptide=Lus10009256 locus=Lus10009256.g ID=Lus10009256.BGIv1.0 annot-version=v1.0 ATGGATGCAGTTGGAAGCACTAAAGGACCCAGATATGACTGCTTGCTCTTTGACTTGGATGATACTCTATACCCATTGAGCTCTGGTCTCAACTTGGCCT GCCGTAAGAACATCCAAGAGTTCATGCTGCAGAAGCTGGCCATTGATGAAAGCGATGTCCCAAGAATGTGCTTGGACCTGTACAAAGAACATGGAACAAC AATGGCTGGATATGAATTCAACAACGACGAGTTCCATGCTTGTGTTCATGGAACCTTGCCTTACAACAAACTGAAGCCTGACCCTGTCCTGAGGAACCTC CTGCTCTCCATGCCCCAGAGGAAAATCATCTTCACCAATGCTGATAAGGCTCATGCTGCTGAAGCTCTTAAGAGATTAGGACTGGAAGACTGTTTCGAAG GCATCATTTGCTTCGAAACTCTGAACCCTTCAGCTGGCACCACCGCTACAACACGAATCCTCTGCAAGCCATCTGTGGAAGCCATTGAAGCTGCCATCAG GATTGCAGATGTTGATCCTAGCAAAACAATCTTCTTTGATGACAGTACACGCAACATTGCAAGTGGGAAACTTGCTGGACTTCGTACCGTTATCGTAGGA AGCTCGGTCCTGGTGCAGGGAGCTGATTATGCCTTGAACAGCATCCACAATATCAGAGAAGCCATACCTGAAATATGGGAGTATGAAGTTGAACAGCAAG CCATTATCCAGTCCACTGCAGTCGAGACTCTGGTCCATGCTTAA
AA sequence Show only first row Show all	>Lus10009256 pacid=23160195 polypeptide=Lus10009256 locus=Lus10009256.g ID=Lus10009256.BGIv1.0 annot-version=v1.0 MDAVGSTKGPRYDCLLFDLDDTLYPLSSGLNLACRKNIQEFMLQKLAIDESDVPRMCLDLYKEHGTTMAGYEFNNDEFHACVHGTLPYNKLKPDPVLRNL LLSMPQRKIIFTNADKAHAAEALKRLGLEDCFEGIICFETLNPSAGTTATTRILCKPSVEAIEAAIRIADVDPSKTIFFDDSTRNIASGKLAGLRTVIVG SSVLVQGADYALNSIHNIREAIPEIWEYEVEQQAIIQSTAVETLVHA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62040			Haloacid dehalogenase-like hyd...		Lus10009256 [exp]	0	1
AT3G62040			Haloacid dehalogenase-like hyd...		Lus10038016 [exp]	1.4	0.8132
AT1G15760			Sterile alpha motif (SAM) doma...		Lus10041687 [exp]	2.2	0.8166
AT1G02810			Plant invertase/pectin methyle...		Lus10013416 [exp]	3.5	0.7691
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Lus10010821 [exp]	5.0	0.7656
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10000673 [exp]	5.5	0.6953
AT5G24530		DMR6	DOWNY MILDEW RESISTANT 6, 2-ox...		Lus10015573 [exp]	5.7	0.7595
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Lus10003196 [exp]	7.9	0.7703
AT4G17370			Oxidoreductase family protein ...		Lus10007490 [exp]	9.0	0.7593
AT1G02810			Plant invertase/pectin methyle...		Lus10010309 [exp]	11.0	0.7625
AT2G17420		NTR2, ATNTRA, N...	NADPH-DEPENDENT THIOREDOXIN RE...		Lus10025845 [exp]	12.4	0.7381

Compare expression of checked genes

Lus10009256 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.