Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48750 128 / 1e-34 CDKA1, CDC2A, CDKA;1, CDC2AAT, CDK2 cell division control 2 (.1) AT1G66750 117 / 2e-30 CDKD1;2, CAK4AT, AT;CDKD;2, CDKD;2 CYCLIN-DEPENDENT KINASE D1;2, CDK-activating kinase 4 (.1) AT4G36450 115 / 2e-29 ATMPK14 mitogen-activated protein kinase 14 (.1) AT3G59790 115 / 2e-29 ATMPK10 MAP kinase 10 (.1) AT1G59580 114 / 4e-29 ATMPK2 mitogen-activated protein kinase homolog 2 (.1.2) AT1G01560 114 / 8e-29 ATMPK11 MAP kinase 11 (.1.2) AT4G11330 114 / 8e-29 ATMPK5 MAP kinase 5 (.1) AT3G45640 114 / 9e-29 ATMAPK3, ATMPK3 mitogen-activated protein kinase 3 (.1) AT4G01370 112 / 3e-28 ATMPK4 MAP kinase 4 (.1) AT1G73690 112 / 6e-28 CDKD1;1, AT;CDKD;1, CAK3AT cyclin-dependent kinase D1;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038018 [exp] 481 / 2e-173 AT3G48750 134 / 1e-37 cell division control 2 (.1) Lus10007921 [exp] 118 / 2e-30 AT4G01370 689 / 0.0 MAP kinase 4 (.1) Lus10014283 [exp] 117 / 6e-30 AT2G18170 611 / 0.0 MAP kinase 7 (.1) Lus10008339 [exp] 117 / 1e-29 AT2G43790 691 / 0.0 MAP kinase 6 (.1) Lus10027091 [exp] 117 / 1e-29 AT2G43790 692 / 0.0 MAP kinase 6 (.1) Lus10036384 [exp] 116 / 1e-29 AT4G01370 681 / 0.0 MAP kinase 4 (.1) Lus10024668 [exp] 114 / 7e-29 AT4G01370 657 / 0.0 MAP kinase 4 (.1) Lus10040593 [exp] 112 / 1e-28 AT1G76540 534 / 0.0 cyclin-dependent kinase B2;1 (.1) Lus10021611 [exp] 112 / 1e-28 AT1G76540 531 / 0.0 cyclin-dependent kinase B2;1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G133500 [exp] 137 / 2e-38 AT3G48750 540 / 0.0 cell division control 2 (.1) Potri.005G231100 [exp] 117 / 4e-30 AT1G59580 617 / 0.0 mitogen-activated protein kinase homolog 2 (.1.2) Potri.002G162500 [exp] 116 / 8e-30 AT4G01370 684 / 0.0 MAP kinase 4 (.1) Potri.017G010200 [exp] 115 / 2e-29 AT2G43790 677 / 0.0 MAP kinase 6 (.1) Potri.007G139800 [exp] 115 / 3e-29 AT2G43790 684 / 0.0 MAP kinase 6 (.1) Potri.005G257500 [exp] 112 / 1e-28 AT1G76540 552 / 0.0 cyclin-dependent kinase B2;1 (.1) Potri.002G003400 [exp] 110 / 6e-28 AT1G76540 553 / 0.0 cyclin-dependent kinase B2;1 (.1) Potri.002G032100 [exp] 111 / 9e-28 AT1G59580 624 / 0.0 mitogen-activated protein kinase homolog 2 (.1.2) Potri.014G088500 [exp] 110 / 1e-27 AT4G01370 676 / 0.0 MAP kinase 4 (.1) Potri.003G131800 [exp] 110 / 1e-27 AT4G01370 656 / 0.0 MAP kinase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10009258 pacid=23160187 polypeptide=Lus10009258 locus=Lus10009258.g ID=Lus10009258.BGIv1.0 annot-version=v1.0 ATGTCGGTCGCTAATTCTCTGGGGTTTTTCTTATTCATCTCTGTTCAGAAACGCCGATGGGATTCTCAGCAATGGCGGACAAATGCGAGCAGCGGGTCAG ACCGATTGCACTGGAAACAAACGACTGCTCTGGTTCGGTGTGCTGGTTCGGTGTGGAGATGCTACGACGAGTGGACTGGGACGATTATCTCCGTCAAGAA GATTTACGCTGCTGATAGGAACAGAATCGCTGCTTTAATGAGAGAAGTCACCCTTCTCTTGGAACTGAATCATCCCAACATCATAAGATTCTTAGATGTG GTTATGTACTCGGATAATATCGAGCTGGTTTCTGAGCATTTGGACTGCAACATGCTCATGTACATCGAGAAGAATCAACAGATGCTTACTCAAGATACGA TAAAAGACTTCTTGCGTCAGATACTACAAGGCCTTGCTTACTGCCATTCCAAGAATATTGTCCATGGGAAGTTGACTCCCAAGAATCTGCTCATAGACTG CACAAGTAGCACCCTGAAGCTTTCTGGTCTTGGTCTGGCTGGAACTGATGCCGTTTGCCACACCACAAATCATTTAATGGTGCAACCAGGATCATACACT CCATGGGAGATAGCATCAGCGTACAAGGCACCGGAGGTCCTTCACCTTTCGGAGGATCGGTCTTCCCCGGCCGATGTGTGGTCTGCAGGCTGTATATTGG CTCTGCTACTTACCAGGCAGCATCTGTTCATAATGAAGAACAAGCAGGGTCACATTCCATCAACAACTCAGCAGGACCACATTATCAGAACGTTGAAGAG CCAGGATTTGTCAGGGAGGTTGGATTTTAGTGATGCAGCTGGTCTTGATCTGATCAATAGAATGTTGTGGTTGGATCCGAAACAGAGGATTACAGCAAAT GATGCTCTGGCGCACGAGTACCTTAACACATTAATGGAGGAGTCTGCTTGA
AA sequence Show only first row Show all	>Lus10009258 pacid=23160187 polypeptide=Lus10009258 locus=Lus10009258.g ID=Lus10009258.BGIv1.0 annot-version=v1.0 MSVANSLGFFLFISVQKRRWDSQQWRTNASSGSDRLHWKQTTALVRCAGSVWRCYDEWTGTIISVKKIYAADRNRIAALMREVTLLLELNHPNIIRFLDV VMYSDNIELVSEHLDCNMLMYIEKNQQMLTQDTIKDFLRQILQGLAYCHSKNIVHGKLTPKNLLIDCTSSTLKLSGLGLAGTDAVCHTTNHLMVQPGSYT PWEIASAYKAPEVLHLSEDRSSPADVWSAGCILALLLTRQHLFIMKNKQGHIPSTTQQDHIIRTLKSQDLSGRLDFSDAAGLDLINRMLWLDPKQRITAN DALAHEYLNTLMEESA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48750		CDKA1, CDC2A, C...	cell division control 2 (.1)		Lus10009258 [exp]	0	1
					Lus10003629 [exp]	9.5	0.6722
					Lus10011314 [exp]	13.1	0.6538
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10025414 [exp]	17.9	0.6470
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10031577 [exp]	26.6	0.6169
AT1G13680			PLC-like phosphodiesterases su...		Lus10031973 [exp]	28.6	0.6378
					Lus10006254 [exp]	29.8	0.6112
					Lus10026426 [exp]	37.5	0.5975
AT5G59380		MBD6, ATMBD6	methyl-CPG-binding domain 6 (....		Lus10029564 [exp]	38.3	0.5999
AT2G26650		AKT1, ATAKT1	K+ transporter 1, K+ transport...		Lus10033052 [exp]	39.6	0.6075
AT1G77460			Armadillo/beta-catenin-like re...		Lus10029690 [exp]	40.8	0.5953

Compare expression of checked genes

Lus10009258 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.