Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46980 134 / 4e-32 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038019 [exp] 1252 / 0 AT2G46980 243 / 1e-68 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G111500 [exp] 404 / 3e-128 AT2G46980 303 / 2e-90 unknown protein Potri.002G186200 [exp] 393 / 4e-124 AT2G46980 312 / 1e-93 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009259 pacid=23160165 polypeptide=Lus10009259 locus=Lus10009259.g ID=Lus10009259.BGIv1.0 annot-version=v1.0 ATGGGTGTTGAAACGCGGAGGGGATTGCAAGATGATGGAGCCAGTGATGCTCGAAGTTTGGGTAGCAATTACCATCCGTCTAGCCAGTCACGGAAGATGT CTGTTGGAATTCTGATAGATTCATTAGCAAACAAAAGAATGGCGAAGGATGATGCGGCTGTGCCAAATGAAGAAATTAAAACTGCTCCTGGTGACGAGAA GGATAAAGTTAAAGATGTAGCTGCAAAAGTAGGGAAACTACCGGAAGCTCCGGAGCAGGTTACTTCCCCGTGGATTACCACCAAGTCACCGAACCAAGCA GCTGAGAATTCTCTTGACAGGAGAGAAACTTCGAAACTATCATCAGCTGGTGGATCGAAGAAGACGCTTAGGAACCAGAAGGGTCCACCTGTGAATCATT CAGTTAAGTTTTTTGCAAATCAAAGTTCGAATTTGCCTTCTAATGATGGCAAGGAGAAGTTAAGCAATGGGCTAACATATAAAAGGAAGGAAAGTAGGAG TAGGAGTTCACGGAGGGAGGATGATTTCACATTTCCAACTGCACATGACATCCCTGTGTCAGATAAAGCAGTGACAGGTGATACAGCTGAGCCTAAGACT GACATTTTGAAGACGAAACTATGGGAGATTTTAGGGACGGTTTCTTCACCTAAAAGTCAGCCTTCAAATATTAAGGGCCAGGATTTAGGTGGAAGCAGTT TGAAGCCAGAGAAAGTAACTGGCAGCAATGGTGATCCAGATATCAAGTCCAAAAATAATTCAGACCCCATTGAAACTGATTCTGAAAGTCCTGCTCATTC TATGAAGAGACTGGTGACACGTGCTTCTGTTCGGAAGAGATTATCCACCAAGAGACAGCCGCCCAAAGCTAGAAAGGGTCCATGTCCTACTTTCACAAAG AAGCCACCAAAGAACAATGTCTTTACCTTTGATGAAGGACTGGCAGACAAAGGAGAAGTTGCTGTCCGTGGTAATCCCTCTACATCAACTAGGTCTAAGA GCAAGGCTCAAACGAAAAAAGCTACTTCCGCACCACGTAAGAGAAGCTACACTAATGACAGTGATTCTGGTAATTTCAAAAGACAAGAAAAAGCTAAAGA CGTGCCTGCAGCCACTGGCAAGACATCTTCACATGGCTCTAAGATGGCAAGTTTGTATATTGACGCTCAGAAAGATGGACATCAACAAAGTTTCTCCCAT CAATTTCCTAGGGAAGATTCCCATCAGTCTGTGGAGGAACCAGAACTGAGTGTGGGTGAGGGTTTCACCCATCCAACAATACCAAGAGATGAAGATCAGC ATCAGGATTTTGGTTATTCTCCCTTCAGCAAAACCATAAGTCCACAGGAATATATGGAAAGTCCAACCCTAAAAGTCAGCTCTCCTGTGTCCAGTTCATC CCCTAGTGCACCACAACCTGGGCTGAATAGAACCCCAGTCCACAGCCCTGTCCTATCAGAAAAAATCAGCCCGTTGGGGAATATATTTCATTTCAGGACT TCCGGAGCATCAAAAGCAGGTGGTTCTGCTGCAAATTCCGAGACAGATGCATCCGTATCCTTAAATATTTATGGGTCTCAAGATGACGGTGTAGCGGTAA CTAAAGATACCCCGGAAGTACAATCATTACCAGATAAGGTGGTAAAGGATGGAGATGGAAGCATTCATTCATTGTCTGAAGATGGGAGCCATGAGAGTTC TGACGAGGGTACGCCAATAGCAAAAGGGGAAACCAACATCCCTTTTCCAGAGCCGGAAGCTAGATGGAGATCCGAGTCCAAATCTAATTCATCCAAAAGG CAGCGCACTCAAGAAAGAGACGGCAAACTGAGCTCCAATGACAATGGATGGACCCAGGTGCTTGACGAAAATTTCAGTGGGGACGAATATGAAAGGGTCG TGATGCTCTTTGCAATGGCTCTAGAAAATTACGTAAAGAAAGTTAAGTCGGCTACCATGTCGAAATCCTCTGAGATTATGATGGCAGTTTCGAAAGATAT TCATCAACTGTTGCATAATGTTAAGCTCCAAATGCAAGAGGATATGGTGAATATGACGACTACCAGCACTTCGAAAAGGAAAAGAGTTGAAGCAAGCTTC CGAGAACAAGTGGACCAATTGAAGGCGATACACGAGAAATTCGAGCAGGACATTCACCAATGTCTTAGGAACTACAAATCCACACTTGAAGGACTCGAAG GACACCAGAATGAACTGAAGGAGACAATTAAAAAGAAAAAAGCTTCCCACCAGAAAATTTTGGTGCAAGTAGAAGAAACAGTGGAGACAATGCTCGCTGA TGCACAAAGAAAGATTCAAGCCGTGGACAAGGCAAGTTCCCTCTCCTACTTACACCTCACTGATAAGATCAATGATCGATCAACATTTAACATTTGA
AA sequence Show only first row Show all	>Lus10009259 pacid=23160165 polypeptide=Lus10009259 locus=Lus10009259.g ID=Lus10009259.BGIv1.0 annot-version=v1.0 MGVETRRGLQDDGASDARSLGSNYHPSSQSRKMSVGILIDSLANKRMAKDDAAVPNEEIKTAPGDEKDKVKDVAAKVGKLPEAPEQVTSPWITTKSPNQA AENSLDRRETSKLSSAGGSKKTLRNQKGPPVNHSVKFFANQSSNLPSNDGKEKLSNGLTYKRKESRSRSSRREDDFTFPTAHDIPVSDKAVTGDTAEPKT DILKTKLWEILGTVSSPKSQPSNIKGQDLGGSSLKPEKVTGSNGDPDIKSKNNSDPIETDSESPAHSMKRLVTRASVRKRLSTKRQPPKARKGPCPTFTK KPPKNNVFTFDEGLADKGEVAVRGNPSTSTRSKSKAQTKKATSAPRKRSYTNDSDSGNFKRQEKAKDVPAATGKTSSHGSKMASLYIDAQKDGHQQSFSH QFPREDSHQSVEEPELSVGEGFTHPTIPRDEDQHQDFGYSPFSKTISPQEYMESPTLKVSSPVSSSSPSAPQPGLNRTPVHSPVLSEKISPLGNIFHFRT SGASKAGGSAANSETDASVSLNIYGSQDDGVAVTKDTPEVQSLPDKVVKDGDGSIHSLSEDGSHESSDEGTPIAKGETNIPFPEPEARWRSESKSNSSKR QRTQERDGKLSSNDNGWTQVLDENFSGDEYERVVMLFAMALENYVKKVKSATMSKSSEIMMAVSKDIHQLLHNVKLQMQEDMVNMTTTSTSKRKRVEASF REQVDQLKAIHEKFEQDIHQCLRNYKSTLEGLEGHQNELKETIKKKKASHQKILVQVEETVETMLADAQRKIQAVDKASSLSYLHLTDKINDRSTFNI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46980			unknown protein		Lus10009259 [exp]	0	1
AT2G34710	HD	ATHB14, PHB-1D,...	PHABULOSA 1D, PHABULOSA, ARABI...		Lus10023357 [exp]	1.4	0.8971
AT2G34710	HD	ATHB14, PHB-1D,...	PHABULOSA 1D, PHABULOSA, ARABI...		Lus10038449 [exp]	2.8	0.8640
AT5G48500			unknown protein		Lus10020403 [exp]	4.7	0.8144
AT1G69420			DHHC-type zinc finger family p...		Lus10036798 [exp]	4.9	0.8615
AT2G16390		DMS1, CHR35, DR...	DEFECTIVE IN RNA-DIRECTED DNA ...		Lus10042070 [exp]	5.5	0.8217
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Lus10014636 [exp]	7.4	0.8590
AT5G46210		CUL4, ATCUL4	cullin4 (.1)		Lus10038504 [exp]	8.0	0.8595
AT5G48520		AtAUG3	augmin 3, unknown protein		Lus10025869 [exp]	13.9	0.8140
AT4G27060		CN, SPR2, TOR1	TORTIFOLIA 1, SPIRAL 2, CONVOL...		Lus10011149 [exp]	14.7	0.8251
AT5G46070			Guanylate-binding family prote...		Lus10013965 [exp]	18.5	0.8419

Compare expression of checked genes

Lus10009259 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.