Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015596 [exp] 39 / 0.0001 ND 41 / 2e-04
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009260 pacid=23160184 polypeptide=Lus10009260 locus=Lus10009260.g ID=Lus10009260.BGIv1.0 annot-version=v1.0 ATGGTATCATCGAGCTCCGGGGTCGGTCATCATGGTGACGACGCCAGTATGGGTGTTACAGTAGTAGCGAGGAAAGCAATCAGGATTGCGGAAATGCTAC CTAAGAGATCGAAACATCTCCAGGGCCAACGATGCTTGGGTCCATGGATTGCAGAGACGAGCTCTTTACAGTACGATAGGATGGAAGCAGCCGAAAGAGA AGCGCAGGCAAAGGTAGCAGCTTCGAGGATTGCACGAGCTTCCGATACGATGGCAGAAGAGCAGTGA
AA sequence Show only first row Show all	>Lus10009260 pacid=23160184 polypeptide=Lus10009260 locus=Lus10009260.g ID=Lus10009260.BGIv1.0 annot-version=v1.0 MVSSSSGVGHHGDDASMGVTVVARKAIRIAEMLPKRSKHLQGQRCLGPWIAETSSLQYDRMEAAEREAQAKVAASRIARASDTMAEEQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10009260 [exp]	0	1
					Lus10040209 [exp]	1.0	0.8201
					Lus10009393 [exp]	16.4	0.8124
					Lus10022518 [exp]	19.9	0.8083
					Lus10029072 [exp]	23.0	0.8083
					Lus10003082 [exp]	25.7	0.8083
					Lus10043004 [exp]	28.1	0.8083
					Lus10003536 [exp]	30.4	0.8083
AT1G14000		VIK	VH1-interacting kinase (.1)		Lus10004066 [exp]	32.5	0.8083
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Lus10005236 [exp]	34.5	0.8083
AT4G27790			Calcium-binding EF hand family...		Lus10005911 [exp]	36.3	0.8083

Compare expression of checked genes

Lus10009260 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.