Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67110 73 / 1e-14 bHLH ALC, bHLH073 ALCATRAZ, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT1G09530 76 / 2e-14 bHLH PIF3, POC1, PAP3 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) AT4G36930 71 / 4e-13 bHLH SPT, bHLH024 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G00050 69 / 2e-12 bHLH bHLH016, UNE10 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G20180 68 / 5e-12 bHLH PIF1, PIL5, bHLH015 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) AT4G28800 67 / 8e-12 bHLH bHLH056 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G46970 66 / 2e-11 bHLH PIL1, bHLH124 phytochrome interacting factor 3-like 1 (.1) AT4G28815 64 / 4e-11 bHLH bHLH127 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G43010 62 / 4e-10 bHLH SRL2, PIF4, AtPIF4 phytochrome interacting factor 4 (.1.2) AT2G24260 61 / 7e-10 bHLH LRL1, bHLH066 LJRHL1-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038020 [exp] 661 / 0 AT4G36930 105 / 1e-24 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10024811 [exp] 76 / 1e-14 AT4G36930 148 / 3e-41 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10022833 [exp] 70 / 2e-12 AT2G20180 310 / 5e-99 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) Lus10015734 [exp] 69 / 3e-12 AT4G00050 138 / 6e-37 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10011899 [exp] 69 / 3e-12 AT2G20180 290 / 6e-92 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) Lus10029805 [exp] 69 / 4e-12 AT3G59060 163 / 7e-45 PHYTOCHROME-INTERACTING FACTOR 5, phytochrome interacting factor 3-like 6 (.1.2.3.4) Lus10041592 [exp] 66 / 6e-12 AT4G36930 106 / 3e-28 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10020727 [exp] 69 / 7e-12 AT2G30800 1223 / 0.0 helicase in vascular tissue and tapetum (.1) Lus10003471 [exp] 67 / 7e-12 AT4G00050 129 / 8e-34 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G111400 [exp] 81 / 4e-16 AT2G46970 131 / 3e-33 phytochrome interacting factor 3-like 1 (.1) Potri.005G001800 [exp] 77 / 1e-14 AT1G09530 247 / 3e-73 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) Potri.013G001300 [exp] 77 / 1e-14 AT1G09530 224 / 6e-65 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) Potri.014G025800 [exp] 73 / 5e-14 AT4G36930 148 / 1e-41 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G124400 [exp] 72 / 1e-13 AT4G36930 154 / 6e-44 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G055400 [exp] 72 / 2e-13 AT2G43010 177 / 6e-50 phytochrome interacting factor 4 (.1.2) Potri.005G139700 [exp] 71 / 5e-13 AT4G36930 171 / 2e-49 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G207200 [exp] 71 / 8e-13 AT2G43010 171 / 1e-47 phytochrome interacting factor 4 (.1.2) Potri.002G143300 [exp] 70 / 1e-12 AT4G00050 278 / 2e-89 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G252800 [exp] 70 / 2e-12 AT2G20180 222 / 7e-66 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10009261 pacid=23160167 polypeptide=Lus10009261 locus=Lus10009261.g ID=Lus10009261.BGIv1.0 annot-version=v1.0 ATGGCTGAACACCCAACTCCTTCAGCCCCATGGTTCTCTCCTTTGTCTGATAAGCCTTACTGTCCTTCTCCCATGGTTCATGATGATGATGATGGGGTTG CTGAACTTGTGTTGGAGAGTGGCCAGCTTCTCGCCCGTCGTCCAAGGTCAGGACTTCGACCCCTATCCTCCGCCCGGTTAAGCTGCCCTTCTCGGCTCGA TAAACTAGATTCACAATGCCACGAGGATGAACCCAGAGCAGCTGAGGAACAACATATGTGGATAGACTCCCACCTTGTTCCAGAGTATAAAGACACTGTT GACTTGGCATTAAACAATGACATCATACCAAAGGTTCCTGACAATCATCAGGTTCAGCATCGTTCGAAGCAAAATCCGATAACTGAATGCAATCTCGGAT GGGGACCGATCGGCCGATTGCAACAACAGCCTGATCATAACGAACCGAGGCTTCATAACTTCGCTCACTTTTTGAGACCTTCGAGGCTTTTAAGACCAGA TGGCCATCAGAGCACGAACAGCTGTTCCACGAGTTCGACAAATGGTCCGAATTCGAGTGCTAGACTTGACCGGCCGATGCAGAGGCAGAGCAGTGCGAGC GCGAAGACTCCTCCTGTTGAGTCTACTCTGGTCGAGAGTGGCTCGAGAAGCGTGAAGGCTCTGGGGAACCAACTCGGCTTGTTAGCTACCGGAGGAGCCA CTGAAGAAGTTGGTTCTCTCGGCGGCGATGGCACAAAGTTCGTCGCGAATATTGCTGCCAGGGACAAAATTCCTGAAAGAGGAAACACTTCGGTATGCTC GCTTGCTGCTTCGAACAATCTTGAGCGACTCAAGGGGAGGGTTCACCATGCGAACAGCAATGGCGAACAGGGAAGAAAGAGGAAACGGCAATCGGCAGAA ATTCACAGCCAGTCTGAGAAGAAGAGAAGAGCAAAAATCAACAAGAAACTGAGCATGCTGCAAGATCTGATACCCAATGCTAACAAGGTAGACAAAGCCT CATTACTCGACGATGCAATCGAGTATCTGAAAACCCTGCAGCTCCAGTTACAGATGATGGCAATGGGGAGGGGGCTTATGATGCATCCAATGATGTTACC AGGTATGCAAGCACCTCAAATGGCGCCGCCACCATCTATGGGAATGGGAATGGGGATGAACATGCCTATGGGTCTTAGCTGCATACCAAACCCATTCTCG ACTTCACCGGTTCTAGGCCTTCCAGGTCAAATGCTACCGGTACCAATGCCACAGTTACAGCCATTTGGTCACCTACCAGTACCAACCGGAGGGTCTTCGT CCAACCCCTCAATTCCTATGCCTGCGGTTGATCTCCTGGGATCTGCTCCTATGATGGGTGCAATAAATGCAGTTCAGAATATCAACCCTGAATTTATGAA TATTGACCACAAGAAGGCTGGATAA
AA sequence Show only first row Show all	>Lus10009261 pacid=23160167 polypeptide=Lus10009261 locus=Lus10009261.g ID=Lus10009261.BGIv1.0 annot-version=v1.0 MAEHPTPSAPWFSPLSDKPYCPSPMVHDDDDGVAELVLESGQLLARRPRSGLRPLSSARLSCPSRLDKLDSQCHEDEPRAAEEQHMWIDSHLVPEYKDTV DLALNNDIIPKVPDNHQVQHRSKQNPITECNLGWGPIGRLQQQPDHNEPRLHNFAHFLRPSRLLRPDGHQSTNSCSTSSTNGPNSSARLDRPMQRQSSAS AKTPPVESTLVESGSRSVKALGNQLGLLATGGATEEVGSLGGDGTKFVANIAARDKIPERGNTSVCSLAASNNLERLKGRVHHANSNGEQGRKRKRQSAE IHSQSEKKRRAKINKKLSMLQDLIPNANKVDKASLLDDAIEYLKTLQLQLQMMAMGRGLMMHPMMLPGMQAPQMAPPPSMGMGMGMNMPMGLSCIPNPFS TSPVLGLPGQMLPVPMPQLQPFGHLPVPTGGSSSNPSIPMPAVDLLGSAPMMGAINAVQNINPEFMNIDHKKAG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36930	bHLH	SPT, bHLH024	SPATULA, basic helix-loop-heli...		Lus10009261 [exp]	0	1
AT2G45040			Matrixin family protein (.1)		Lus10028180 [exp]	3.0	0.9107
AT1G29700			Metallo-hydrolase/oxidoreducta...		Lus10035042 [exp]	3.7	0.9193
AT4G35320			unknown protein		Lus10026561 [exp]	5.0	0.9028
AT1G06040	CO	BBX24, STO	SALT TOLERANCE, B-box domain p...		Lus10025579 [exp]	6.3	0.9161
AT3G52060			Core-2/I-branching beta-1,6-N-...		Lus10008954 [exp]	6.6	0.9078
AT3G03440			ARM repeat superfamily protein...		Lus10033593 [exp]	9.4	0.8621
AT3G10940		LSF2	LIKE SEX4 2, dual specificity ...		Lus10034214 [exp]	9.7	0.8813
AT5G16990			Zinc-binding dehydrogenase fam...		Lus10030087 [exp]	9.9	0.8854
AT3G10420		SPD1	SEEDLING PLASTID DEVELOPMENT 1...		Lus10028811 [exp]	11.0	0.8846
AT5G06530		AtABCG22, ABCG2...	Arabidopsis thaliana ATP-bindi...		Lus10012284 [exp]	11.0	0.8857

Compare expression of checked genes

Lus10009261 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.