Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03550 75 / 3e-16 RING/U-box superfamily protein (.1) AT1G72220 73 / 1e-15 RING/U-box superfamily protein (.1) AT4G33565 71 / 5e-15 RING/U-box superfamily protein (.1) AT5G17600 71 / 5e-15 RING/U-box superfamily protein (.1) AT4G17905 70 / 1e-14 ATL4H RING/U-box superfamily protein (.1) AT2G18650 66 / 4e-13 MEE16 maternal effect embryo arrest 16, RING/U-box superfamily protein (.1) AT5G10380 66 / 4e-13 ATRING1, RING1 RING/U-box superfamily protein (.1) AT1G72310 66 / 5e-13 ATL3 RING/U-box superfamily protein (.1) AT3G62690 62 / 5e-12 ATL5 AtL5 (.1) AT5G05810 63 / 6e-12 ATL43 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015901 [exp] 183 / 2e-57 AT1G72220 175 / 3e-51 RING/U-box superfamily protein (.1) Lus10012745 [exp] 77 / 6e-17 AT4G33565 168 / 4e-49 RING/U-box superfamily protein (.1) Lus10000333 [exp] 66 / 6e-13 AT3G05200 309 / 2e-102 RING/U-box superfamily protein (.1) Lus10013618 [exp] 64 / 2e-12 AT5G17600 220 / 1e-69 RING/U-box superfamily protein (.1) Lus10029949 [exp] 64 / 2e-12 AT3G05200 171 / 1e-50 RING/U-box superfamily protein (.1) Lus10012975 [exp] 64 / 3e-12 AT2G20030 291 / 2e-95 RING/U-box superfamily protein (.1) Lus10035677 [exp] 63 / 5e-12 AT3G03550 150 / 5e-42 RING/U-box superfamily protein (.1) Lus10037264 [exp] 63 / 6e-12 AT3G03550 144 / 3e-40 RING/U-box superfamily protein (.1) Lus10015502 [exp] 62 / 9e-12 AT4G30400 251 / 1e-79 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G101800 [exp] 81 / 2e-18 AT1G72220 195 / 3e-58 RING/U-box superfamily protein (.1) Potri.007G111900 [exp] 77 / 4e-17 AT4G33565 163 / 1e-46 RING/U-box superfamily protein (.1) Potri.017G049300 [exp] 74 / 7e-16 AT4G33565 166 / 6e-48 RING/U-box superfamily protein (.1) Potri.001G141200 [exp] 72 / 4e-15 AT5G17600 207 / 1e-63 RING/U-box superfamily protein (.1) Potri.007G097500 [exp] 72 / 4e-15 AT5G10380 145 / 2e-40 RING/U-box superfamily protein (.1) Potri.003G093100 [exp] 72 / 4e-15 AT5G17600 196 / 1e-59 RING/U-box superfamily protein (.1) Potri.005G071300 [exp] 70 / 1e-14 AT5G10380 135 / 1e-36 RING/U-box superfamily protein (.1) Potri.013G073500 [exp] 67 / 1e-13 AT3G03550 262 / 2e-85 RING/U-box superfamily protein (.1) Potri.019G043900 [exp] 64 / 9e-13 AT3G03550 223 / 3e-71 RING/U-box superfamily protein (.1) Potri.006G176700 [exp] 65 / 1e-12 AT4G30400 304 / 3e-98 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10009264 pacid=23141883 polypeptide=Lus10009264 locus=Lus10009264.g ID=Lus10009264.BGIv1.0 annot-version=v1.0 ATGCTCCGGCTGCTGCCCAAATGCAACCACGCTTTCCACGTTACTTGCATCGACACGTGGCTCCGTTCCCACACCAACTGCCCGCTCTGCCGGGCCCATA TCGTCAATGAAGTCCGGCTCGGTACTGGTCCCGTTCGAGCCCATCAGGACCGTTCGAGCCCAAACCAGGCTGCAGCCCTGACGGAGGATTCCGGTGATGT TACGGACGGAGGTGAGCGAGCTGATGTGACGAACGACAACGGCGACGGTGAATTGAAAGAGGAGGAGGAAGTTTCGGCGGCGGCGGTGAAGAAATTGAGG AGGTCTAATTCGATGGATTATCTACCGGATGCGGCGGCGGTTCTCGGTATTTGTGACGAATCAGGAACTTCGAGACACTCATCGGGTTCTTCTTCTTCGA CTGCGGCGGTTTCGATGAAGAGGTCTCACTCTAGCGGCGGGCGGTTCTTCTTATCGAGAATCAATAGGAGCCAGAGTCTGGTTTTTCCGTTGTGA
AA sequence Show only first row Show all	>Lus10009264 pacid=23141883 polypeptide=Lus10009264 locus=Lus10009264.g ID=Lus10009264.BGIv1.0 annot-version=v1.0 MLRLLPKCNHAFHVTCIDTWLRSHTNCPLCRAHIVNEVRLGTGPVRAHQDRSSPNQAAALTEDSGDVTDGGERADVTNDNGDGELKEEEEVSAAAVKKLR RSNSMDYLPDAAAVLGICDESGTSRHSSGSSSSTAAVSMKRSHSSGGRFFLSRINRSQSLVFPL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03550			RING/U-box superfamily protein...		Lus10009264 [exp]	0	1
AT1G24140			Matrixin family protein (.1)		Lus10008449 [exp]	3.9	0.7259
AT5G42850			Thioredoxin superfamily protei...		Lus10023026 [exp]	6.3	0.6882
AT3G47570			Leucine-rich repeat protein ki...		Lus10030634 [exp]	10.5	0.7320
AT5G36930			Disease resistance protein (TI...		Lus10026845 [exp]	14.3	0.7269
					Lus10040041 [exp]	27.1	0.6866
AT2G25700		ASK3	SKP1-like 3 (.1)		Lus10043288 [exp]	27.9	0.6823
AT5G50600		ATHSD1	hydroxysteroid dehydrogenase 1...		Lus10001511 [exp]	34.9	0.6787
AT2G36190		ATCWINV4	cell wall invertase 4 (.1)		Lus10014217 [exp]	37.9	0.6746
AT5G14760		AO	L-aspartate oxidase (.1)		Lus10018901 [exp]	40.2	0.6746
					Lus10016136 [exp]	42.4	0.6746

Compare expression of checked genes

Lus10009264 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.