Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06340 69 / 4e-15 Plant Tudor-like protein (.1) AT3G06520 59 / 3e-10 agenet domain-containing protein (.1) AT1G09320 56 / 3e-09 agenet domain-containing protein (.1) AT1G11420 56 / 4e-09 ATDUF2 DOMAIN OF UNKNOWN FUNCTION 724 2 (.1) AT2G47230 53 / 4e-08 ATDUF6 DOMAIN OF UNKNOWN FUNCTION 724 6 (.1.2) AT1G26540 52 / 6e-08 Agenet domain-containing protein (.1) AT1G03300 41 / 0.0003 ATDUF1 DOMAIN OF UNKNOWN FUNCTION 724 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027325 [exp] 186 / 1e-60 AT1G06340 95 / 2e-25 Plant Tudor-like protein (.1) Lus10039027 [exp] 173 / 2e-55 AT1G06340 91 / 7e-24 Plant Tudor-like protein (.1) Lus10037805 [exp] 64 / 8e-12 AT3G06520 271 / 9e-86 agenet domain-containing protein (.1) Lus10002437 [exp] 62 / 2e-11 AT3G62300 252 / 1e-73 DOMAIN OF UNKNOWN FUNCTION 724 7 (.1.2) Lus10010903 [exp] 57 / 1e-09 AT1G09320 136 / 3e-35 agenet domain-containing protein (.1) Lus10017088 [exp] 57 / 2e-09 AT3G06520 283 / 1e-90 agenet domain-containing protein (.1) Lus10000615 [exp] 56 / 3e-09 AT1G16890 286 / 9e-95 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10031429 [exp] 54 / 2e-08 AT1G09320 131 / 2e-33 agenet domain-containing protein (.1) Lus10000353 [exp] 54 / 2e-08 AT1G16890 313 / 3e-103 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G151200 [exp] 98 / 3e-26 AT1G06340 141 / 3e-44 Plant Tudor-like protein (.1) Potri.009G155250 [exp] 67 / 9e-15 AT1G06340 85 / 1e-22 Plant Tudor-like protein (.1) Potri.005G011100 [exp] 62 / 1e-11 AT1G09320 264 / 3e-84 agenet domain-containing protein (.1) Potri.013G006900 [exp] 60 / 8e-11 AT1G09320 268 / 1e-85 agenet domain-containing protein (.1) Potri.002G192300 [exp] 60 / 2e-10 AT1G26540 201 / 3e-54 Agenet domain-containing protein (.1) Potri.014G117800 [exp] 53 / 3e-08 AT1G11420 194 / 1e-52 DOMAIN OF UNKNOWN FUNCTION 724 2 (.1) Potri.006G017400 [exp] 43 / 6e-05 AT5G55600 493 / 1e-166 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0049 [flax] [poplar] Tudor PF05641 [flax] [poplar] Agenet Agenet domain
Representative CDS sequence Show only first row Show all	>Lus10009266 pacid=23141887 polypeptide=Lus10009266 locus=Lus10009266.g ID=Lus10009266.BGIv1.0 annot-version=v1.0 ATGATGATGATGATGGAGGAGGCTCTATTTGCACGCGGGGATCACGTGGAAGTGTTGAGCAACGACGAAGGGTTCCAGGGTTCTCACTTTGATGGCTTGG TGGTCAAGTATGTGGGTTCAAATCAGTATAGAGTGGAGTACACAAACCTCGTAACAGAAGAAACAACGTCGGAACTGCTTACAGAGAATGTGGGAGGCAA GGTGATTCGGCCTTATCCTACGAGAATCTGGGTTGGGGAAGGTTTTAATGCGAGAGAAGTTGTTGATGTTCGGGATCACGAAGGTTGGTGGACTGGGAGA GTCACTGGGAGATCAGAAGGAGGTTTGATGTTTTACGTTTACTTCGACTCGCCGGATCAGCAAGAGATGGCTTACCCTGTTTCCATGATTAGAACTCATC TTGATTGGGTGGACCGCACCTGGATTCAGCACGAATCAAGAACAAGAACAAGACAGACCAGATCATTTCACATCATATATATGTACAGGTACAGGTTGGA CAAATGTAGAATCTACAAATTCAATCAGATTAATCAAGTTCCGTGGGCATTTCGATTTTCGAATTCTTATTCTGATTACATTGAATTCGAACCCTAA
AA sequence Show only first row Show all	>Lus10009266 pacid=23141887 polypeptide=Lus10009266 locus=Lus10009266.g ID=Lus10009266.BGIv1.0 annot-version=v1.0 MMMMMEEALFARGDHVEVLSNDEGFQGSHFDGLVVKYVGSNQYRVEYTNLVTEETTSELLTENVGGKVIRPYPTRIWVGEGFNAREVVDVRDHEGWWTGR VTGRSEGGLMFYVYFDSPDQQEMAYPVSMIRTHLDWVDRTWIQHESRTRTRQTRSFHIIYMYRYRLDKCRIYKFNQINQVPWAFRFSNSYSDYIEFEP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06340			Plant Tudor-like protein (.1)		Lus10009266 [exp]	0	1
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Lus10017004 [exp]	1.7	0.8404
AT2G42940	AT-hook		Predicted AT-hook DNA-binding ...		Lus10007340 [exp]	3.5	0.8127
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10041851 [exp]	4.5	0.8323
AT1G13570			F-box/RNI-like superfamily pro...		Lus10028366 [exp]	6.9	0.7579
AT2G01770		ATVIT1, VIT1	vacuolar iron transporter 1 (....		Lus10003706 [exp]	6.9	0.8134
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10028397 [exp]	7.9	0.8312
					Lus10020900 [exp]	11.2	0.8070
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Lus10014175 [exp]	11.4	0.8128
AT4G14600			Target SNARE coiled-coil domai...		Lus10036461 [exp]	11.7	0.6974
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Lus10041764 [exp]	13.7	0.7713

Compare expression of checked genes

Lus10009266 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.