Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02070 58 / 1e-10 unknown protein AT3G60520 54 / 2e-09 unknown protein AT1G43770 41 / 0.0004 RING/FYVE/PHD zinc finger superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015899 [exp] 264 / 5e-90 AT1G02070 58 / 9e-11 unknown protein Lus10028179 [exp] 49 / 2e-07 AT3G60520 113 / 2e-33 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G158400 [exp] 142 / 1e-42 AT1G02070 57 / 8e-11 unknown protein Potri.002G142600 [exp] 57 / 2e-10 AT3G60520 138 / 4e-43 unknown protein Potri.014G058300 [exp] 56 / 4e-10 AT3G60520 134 / 2e-41 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009267 pacid=23141885 polypeptide=Lus10009267 locus=Lus10009267.g ID=Lus10009267.BGIv1.0 annot-version=v1.0 ATGACAGCCCAAAGAGCACCGAATCCTTCTCCTCCTCCTCCACTATCCTCCAATCGCCCACACAATCCCACTCCCGAGTGCTGCATGTGCGGCGATTTCG GCTTCTCTTCCGAGCTTTTCCAGTGCCAAGTCTGCCATTTCAGATCTCAGCACAAGTACTGCAGCAATCTGTACCCGAAAGCCGAATCTTACAAAGCCTG CAATTGGTGCCTCCTCCAGCGAGACGACTCCAAAGACAAGTCCCAGAACTCATCCAATTCCTCTTCCTCCACTCACAACAAAGCCAAAGATCAATCCGCT ACCAAGATCAGCACTGATAACAACAGGAGAAAAATTTCGGATCTAGGTCTTACGGTAAAGATCAAGGACGGCAGGAGTAACGATCGGAGTAGCAATTTGC AGTGGCAATCGATCATCGATGGACCTATCACGAAGAAGAAGTCGCCGGAAAGATCGCCGGTGGCAACCACTCCGACTACAACGCGGCGGAGGCTGATCAG AAACGGCCAATTGGAAGAGAAATTGAGACGGACGAAATCAGATGTTATGGCGAGCAATCGTAACAACAATAAGAGCAGTAGCAACAGCAATATTAATATT GGAAATGAGAGGAGGCAAGTTATTTTCCGGAGTAAGGTCAGACGATATAAGCTTCTGGATGAAGTCTCCAGCTGA
AA sequence Show only first row Show all	>Lus10009267 pacid=23141885 polypeptide=Lus10009267 locus=Lus10009267.g ID=Lus10009267.BGIv1.0 annot-version=v1.0 MTAQRAPNPSPPPPLSSNRPHNPTPECCMCGDFGFSSELFQCQVCHFRSQHKYCSNLYPKAESYKACNWCLLQRDDSKDKSQNSSNSSSSTHNKAKDQSA TKISTDNNRRKISDLGLTVKIKDGRSNDRSSNLQWQSIIDGPITKKKSPERSPVATTPTTTRRRLIRNGQLEEKLRRTKSDVMASNRNNNKSSSNSNINI GNERRQVIFRSKVRRYKLLDEVSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02070			unknown protein		Lus10009267 [exp]	0	1
AT1G29690		CAD1	constitutively activated cell ...		Lus10025235 [exp]	1.0	0.9046
AT3G16175			Thioesterase superfamily prote...		Lus10006837 [exp]	2.0	0.8907
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Lus10019480 [exp]	2.2	0.8869
AT1G18190		GC2	golgin candidate 2 (.1)		Lus10031344 [exp]	3.0	0.8934
AT1G08970	CCAAT	NF-YC9, HAP5C	"nuclear factor Y, subunit C9"...		Lus10004468 [exp]	3.5	0.8945
AT1G07250		UGT71C4	UDP-glucosyl transferase 71C4 ...		Lus10039037 [exp]	4.9	0.8612
AT1G71950			Proteinase inhibitor, propepti...		Lus10038252 [exp]	4.9	0.8823
AT3G20920			translocation protein-related ...		Lus10009945 [exp]	6.3	0.8694
AT4G38090			Ribosomal protein S5 domain 2-...		Lus10035937 [exp]	8.4	0.8493
AT5G58950			Protein kinase superfamily pro...		Lus10015436 [exp]	8.7	0.7969

Compare expression of checked genes

Lus10009267 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.