Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13600 846 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22070 446 / 4e-147 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G02750 424 / 8e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G25360 419 / 9e-137 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G13650 426 / 1e-136 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G29760 417 / 2e-136 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22410 410 / 2e-134 SLO1 SLOW GROWTH 1 (.1) AT3G53360 402 / 2e-130 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G02330 395 / 2e-126 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22690 392 / 1e-125 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015898 [exp] 1150 / 0 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016425 [exp] 427 / 6e-140 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10018223 [exp] 423 / 9e-139 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 423 / 1e-138 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 408 / 9e-134 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021232 [exp] 406 / 1e-132 AT2G33680 818 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030908 [exp] 417 / 2e-131 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10020918 [exp] 400 / 2e-131 AT2G29760 474 / 3e-159 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030581 [exp] 417 / 4e-131 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G104700 [exp] 881 / 0 AT2G13600 834 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G044700 [exp] 449 / 7e-149 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G085500 [exp] 444 / 2e-146 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.013G058900 [exp] 450 / 2e-145 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 446 / 2e-145 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G136200 [exp] 437 / 3e-144 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.004G111300 [exp] 423 / 5e-137 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G155100 [exp] 416 / 3e-135 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G245300 [exp] 412 / 3e-133 AT3G22690 570 / 0.0 unknown protein Potri.012G041200 [exp] 412 / 3e-133 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10009269 pacid=23141855 polypeptide=Lus10009269 locus=Lus10009269.g ID=Lus10009269.BGIv1.0 annot-version=v1.0 ATGCCGGTCAGAAACACATTCACTTGGAACTCGATTATCAGCACGTTGATGAAATCCGGTTTCCTCGATGAGGGTGTGCAGTTATTCGAAGCTATTCCCC ACCCCGATCTGTGCTCTTGGAATCTAATGGTTGCTGGTTTTGCTCAGCATGATGAGCTCCAAAAAGCTCTGGATTATCTGAGTAGAATGCACAGGGAGAA TTTCGTTCTTAATGAATACACTTTCGGCAGTGGTTTAAGTGCTTGTGCAGGTTTGAAGGACTTGAAGACCGGTACCCAACTTCATGCTTTGGTCCTGAAA TGCCAATACGCTGTAGATGTTTATATGGGGTCAGCTCTTGTTGATATGTATTCTAAATGTGGTGTTGTGGATTGTGCTCAGATGATTTTCGACGAATTGG AGGAAAGGAACGTTGTTTCTTGGAATAGCTTGATCACTTGCTACGAGCAAAATGGTCCGGCAAAGAAAGCACTGGACGTGTTTGTAACGATGATGGAGAA TGCCTTCGCACCGGATGATGTGACACTGGCTAGTGTAGTCAGTGCTTGTGCAACTTTGGCGGCGCTGAAGCAAGGTTCGGAAATTCATGCTCGTGTAGTG AAATGTAACAAACTACGGCTTGATCTTATCTTAGGAAATGCACTAGTGGACATGTATGCAAAATGTGGTAAAATTAGTGAAGCTAGAAGTGTATTTGATA GGATCCCAGTGAGGAATGTGGTATCTGAGACGTCTATGTTGAGTGGCTATGCCAAAGTTGCGAGTTTTAAATCCGCAAGACTAATGTTCACAAAGATGAT GGACAGAAATGTGGTCTCTTGGAATGCTCTTATTGCTGGATATACACAGAACGGCGAAGACGAAGAGGCCCTCAGACTCTTCTGTATGCTGAAGGGGGAA TCTATTTTCCCGACTCACTACACCTTTGGCAACTTATTGAATGCTTGTGCCAATCTTGCTGATTTGCACCTCGGCAAGCAGGCCCACGTACATGTTCTGA AACACGGATTCCGGTTTCAACACGATGAAGATCCCGATACTTTTGTCGGGAACTCTCTGATAGACATGTACATGAAATGCGGAGCGGTTGAAGACGGTCG TAAGGTTTTCCGACGAATGGTTGCAAAGGATTACGTCTCTTGGAATGCTATGATCGTAGGGTATGCACAAAACGGGTACGGAGTGGAGGCTCTCAAGTTA TTTAACGAAATGCTTGAATCTGGAGAGAAGCCGGATCATGTCACTATGATCGGTGTCTTGTGTGCTTGCAGTCATGCAGGTCTTGTTTGTGAAGGACGTC ATTACTTTTCCTCGATGTTCAAAAATTACGGGTTAATCCCTGTGAAGGATCATTACACATGTATGGTTGATTTACTCGGTCGAGCAGGTTGCCTTGACGA AGCCAAGAATCTGATAGAAACGATGCCTATAGAGCCTGATGCTGTTATATGGGGTTCTTTGCTCGGTGCGTGTAAAATTCGTCGCAATATTACTCTGGGG AAGTATGTAGCAGAAAAGCTGCTGGAAATCGATCCAACGAATTCTGCACCTTACGTTCTTCTTTCGAACATGTATGCCGAACAAGGAAGGTGGGGGGATG TTAGAAAGGTGAGGAGCCTGATGAGACGTGAGGGAGTTGTTAAACAGCCTGGTTGCAGTTGGATTGAGATCATGGGTAACGTGCATACTTTCATGGTGAA AGATAAAAGACATCCGATGAAGAGGGATATTTATCTATTGTTGAGATGTTTAACTGAGCAGATGAAGCGAGTTGGATATAATTCGTTTTTCGGCGACCTT GAAGCCTGCAATGATTCGACTGAAAGAGAATCTGAATCTTTTCTGAAATTGCAGTTGCCGGATATACAGCTTGATGATTCTGTCCAGAGTGATAGCTTTT GGGATGAAGAAATAGCCACTGTTGATGAACTAAGGGAATCGGTTTTAGCTGCTAGATAG
AA sequence Show only first row Show all	>Lus10009269 pacid=23141855 polypeptide=Lus10009269 locus=Lus10009269.g ID=Lus10009269.BGIv1.0 annot-version=v1.0 MPVRNTFTWNSIISTLMKSGFLDEGVQLFEAIPHPDLCSWNLMVAGFAQHDELQKALDYLSRMHRENFVLNEYTFGSGLSACAGLKDLKTGTQLHALVLK CQYAVDVYMGSALVDMYSKCGVVDCAQMIFDELEERNVVSWNSLITCYEQNGPAKKALDVFVTMMENAFAPDDVTLASVVSACATLAALKQGSEIHARVV KCNKLRLDLILGNALVDMYAKCGKISEARSVFDRIPVRNVVSETSMLSGYAKVASFKSARLMFTKMMDRNVVSWNALIAGYTQNGEDEEALRLFCMLKGE SIFPTHYTFGNLLNACANLADLHLGKQAHVHVLKHGFRFQHDEDPDTFVGNSLIDMYMKCGAVEDGRKVFRRMVAKDYVSWNAMIVGYAQNGYGVEALKL FNEMLESGEKPDHVTMIGVLCACSHAGLVCEGRHYFSSMFKNYGLIPVKDHYTCMVDLLGRAGCLDEAKNLIETMPIEPDAVIWGSLLGACKIRRNITLG KYVAEKLLEIDPTNSAPYVLLSNMYAEQGRWGDVRKVRSLMRREGVVKQPGCSWIEIMGNVHTFMVKDKRHPMKRDIYLLLRCLTEQMKRVGYNSFFGDL EACNDSTERESESFLKLQLPDIQLDDSVQSDSFWDEEIATVDELRESVLAAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10009269 [exp]	0	1
AT5G09500			Ribosomal protein S19 family p...		Lus10021886 [exp]	41.8	0.7434
AT5G47630		MTACP3	mitochondrial acyl carrier pro...		Lus10000050 [exp]	187.5	0.6702
AT2G24830	C3HZnF		zinc finger (CCCH-type) family...		Lus10026901 [exp]	231.0	0.6591

Compare expression of checked genes

Lus10009269 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.