Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24560 541 / 4e-176 UBP16 ubiquitin-specific protease 16 (.1) AT5G65450 466 / 4e-151 UBP17 ubiquitin-specific protease 17 (.1) AT2G24640 398 / 8e-126 UBP19 ubiquitin-specific protease 19 (.1.2) AT4G31670 394 / 5e-125 UBP18 ubiquitin-specific protease 18 (.1) AT1G17110 387 / 5e-119 UBP15 ubiquitin-specific protease 15 (.1.2) AT3G14400 231 / 2e-64 UBP25 ubiquitin-specific protease 25 (.1) AT5G57990 233 / 4e-64 UBP23 ubiquitin-specific protease 23 (.1) AT4G17895 154 / 1e-38 UBP20 ubiquitin-specific protease 20 (.1) AT5G46740 150 / 3e-37 UBP21 ubiquitin-specific protease 21 (.1) AT4G39910 135 / 5e-34 ATUBP3 ubiquitin-specific protease 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015894 [exp] 966 / 0 AT5G65450 216 / 9e-60 ubiquitin-specific protease 17 (.1) Lus10015893 [exp] 644 / 0 AT4G24560 306 / 2e-95 ubiquitin-specific protease 16 (.1) Lus10026918 [exp] 398 / 1e-125 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Lus10020116 [exp] 397 / 2e-125 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Lus10005591 [exp] 229 / 5e-64 AT3G14400 639 / 0.0 ubiquitin-specific protease 25 (.1) Lus10013726 [exp] 228 / 1e-63 AT3G14400 641 / 0.0 ubiquitin-specific protease 25 (.1) Lus10035825 [exp] 227 / 1e-61 AT5G57990 537 / 3e-178 ubiquitin-specific protease 23 (.1) Lus10036607 [exp] 224 / 9e-61 AT5G57990 536 / 5e-178 ubiquitin-specific protease 23 (.1) Lus10043126 [exp] 193 / 7e-51 AT5G46740 367 / 6e-116 ubiquitin-specific protease 21 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G104800 [exp] 818 / 0 AT4G24560 551 / 7e-179 ubiquitin-specific protease 16 (.1) Potri.005G156900 [exp] 797 / 0 AT4G24560 639 / 0.0 ubiquitin-specific protease 16 (.1) Potri.018G009500 [exp] 413 / 7e-131 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Potri.006G270600 [exp] 408 / 3e-130 AT2G24640 698 / 0.0 ubiquitin-specific protease 19 (.1.2) Potri.011G095200 [exp] 387 / 9e-120 AT1G17110 799 / 0.0 ubiquitin-specific protease 15 (.1.2) Potri.001G378900 [exp] 383 / 4e-117 AT1G17110 848 / 0.0 ubiquitin-specific protease 15 (.1.2) Potri.018G107500 [exp] 240 / 7e-66 AT5G57990 580 / 0.0 ubiquitin-specific protease 23 (.1) Potri.011G112800 [exp] 233 / 2e-65 AT3G14400 690 / 0.0 ubiquitin-specific protease 25 (.1) Potri.001G394600 [exp] 223 / 7e-62 AT3G14400 653 / 0.0 ubiquitin-specific protease 25 (.1) Potri.006G185200 [exp] 228 / 8e-62 AT5G57990 620 / 0.0 ubiquitin-specific protease 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00443 [flax] [poplar] UCH Ubiquitin carboxyl-terminal hydrolase
Representative CDS sequence Show only first row Show all	>Lus10009273 pacid=23141875 polypeptide=Lus10009273 locus=Lus10009273.g ID=Lus10009273.BGIv1.0 annot-version=v1.0 ATGCATGTCCCCGGGGATCTAGGGTTTTCAAGCCTAGCCCTTGCGGCGTTGTGCCTCGCTTTGACGGAGGTCATCTTATTAATTTGTCCTAGACCACTAC GAGATGTGCCCAGTGCAAAGCCGTCAGATATTGGTACTTCTGGCAAGTGCCAAATCATCCACTGGCGGCAGGGTCACAAGTATAATTGTCACCGTCCTAC CATCTTGAATGATGATGGAACTGATTTTGGGAAGGAGGTGGCAGAGAAAAATGAGCCTGATATTCATAATGCTAGTTGGGAAGATGCACCAACTGAAACA TCATCAATTGATCGTGCATGTTCTGATTCTACTTGGTCCCCTGAACTTGCATCTAAAACGGAAGAAGATACTAGAGTTGATTTCATATCTCATACAACGG GGATGGATTCTATATCTGATTCATCAAGCACCTTGTTTTCTGGCTTTTCCAGTCCTGCTTCAAGTGGAGAGTTGTCTGATGAGGCTTCTGTCAGTGAAAG CATCAGTTCAAATGACGCAGAGGGTCCAGATAAACAATCATCTACTGATGTCACACCTGACATTCTGCGTTCTGGCTTAAACAAAAGAGATCAACCTGAG CCATTGTCTCCAAAATTCGCTAAGTTGGCTGATTCCTCTAATTACGTCAGTTACATGACTAATTTGAATGAGGTTAAAAAGGTATCAAATTCTTATAATC CTAGCTCTCCGAGTCCCAACATCAGAGCTACATCAGAGTTGGTTATCCCCGCTGTTGTTGAAGACAATAATGCTCAATCCAACACAGTCAAAACTGCAAA GACAAAGTTATCTGGATCTGAACCAAACCTTCAATTTAAGTTCAGCATGTCCAGAACTGATGCTCTTTCCTCTCAGAAACTTTCAGAAGGGAAAAAATTC AAATCAGTTGAGGCACCCAGTAGAGAGGCTGCTCCTCGAAATTTCAATGTGGATGCTCCAAGAATTAGCAAATCTGCAAACTCGGATAGTTATACTCTTA TGAAGAATGGCTCTTCTGGTGGTTCCAAAATCATAATGGACCATGAGCTTCGAGCGGTGTCATTGTCCTGTTCCCCCCATACATCTTCCAATGGAGGAGA TGTTTCAAAAGTTGCCGGATCTACTTTCTCAGCTGCAAAAGGGTCAAATCTGGTTGCTAGCGATAATGTGACGGCTTCACATTCATCAAATTCGAGACTC CCTCCTTATGCTTCTGAGTGTAACCCTTGTAGCACAAGTGGCTGTGTTTTGCCAAATGTTAAGGTTGTGAAAGTTGAGGATGTTGAAGGCTCTCCGGTTA CTACTAATCAATCTGGGACTATTTCTTCAAACTCTATAGGTGGGTTGAGATTGTCAATGAGGAAGGTTGTTGACCAATTCAGAGGCCCTAAATCCGGAAG ATACAGTCATAAGGGTCTTTTTCCTTATGATCTATTTGTGAAGTTATATTCTCATAAGGTGGATTTGCAACCATGCGGCCTTATCAATTGTGGGAACAGC TGCTATGCTAATGCTGTCCTTCAGTGTTTGTTGTTTACTCCTCCTCTGACTGCTTATTTTGTCCAAGGACATCACTCTATAGCCTGTGCGACGAAACATT GGTGTTTCATCTGTGAGTTTGAAAATCTTGTTCTGAAGGCAAAGGAGGGAAGAACCCCACTATCTCCTATTTCTATATTATCACAACTTCAAAATATTGG AAGCAACCTAGGCAATGGAAGGGAAGAAGATGCTCATGAGTTTTTAAGGTATGCTATTGAGGCAATGCACTCTGTTTTCCTGAAAGAAGCTGGAATTAAA GCAGTGGGCTCCATTGAAGAAGAAACTACGCTGATAGGACTCACTTTTGGTGGCTATCTAAGATCAAAGATAAAATGCATGAAGTGCCACTACAAATCAG AACGACAAGAAAGAATGATGGATCTTACTGTTGAAATAGAAGGAGACATAGGGAAACTTGAAGATGCACTCAGACGATTTACCAGTACAGAGATTCTCGA TGGAGAAAACAAGTACCAGTGTAGCAGATGCCAATCTTATGAAAAAGCTAAGAAGAAGTTGACGATACTGAAGGCCCCTAATATACTTACAATTGCTTTG AAGAGATTCCAGTCGGGTAGATTTGGAAAGCTCAATAAATCAATTCGGTTCCCGGAGATCTTGGACCTGGCACCATATATGAGTGGTACAAGTGACAAGT CGCCCATTTACAGGCTCTATGCGGTGATTGTGCACTTGGATGTTTTAAACGCTTCGTTTTCTGGTCATTATGTGTGCTATGTGAAAAATAGTCAGAACAG GTGGTACAAGATTGACGACAGTAGGGTAACAACTGTTGAGCTGGAAAGGGTCTTGACCAAAGGGGCATACATGCTTCTATATGCAAGATGCTCTCCCCAG GCCCCATGGTTGATAAAGAACGGAACAGTGGCCCCGGATGTGAAGAATAAATGTAGTGCTCCCCGGATACATTCAAAAGGACCAAGTCCAAGACCCGCTG TTGAAATGCAGCCGGGTTCAGTTTCTCAAGATGACGCAGACAATGTAGAATCCTTCTATTTGAAGTATCATAAGTTGCAAAGGATCTTGGAAGCGGACTC GTCGAGCGACAATTACTCTTTCACGAGTAGCAACTCCGATGAAGGTTCGTGCAGCACTGATAGCACCCGGGACTCAACCAGCGTCGATGATCTGTCCGAT TACATTTTTGGCGGCGGCTGGAGCAGCCCGTATAAGAAAGCAACAGATTCGGACACCTCATCATCTTCCTCTCCACTTTATACAAGGCATTTGCCAGATT CGAACACTGACCGAAATGCCTCAGGGTTTACAGAGACAAGTAGTTCGAGGGGTGCTGATATGGAAGGAGGTGAGTATCATCCATTTTATCATGCTGACAA TGGTAATCATGATTATAACAATAAAAACTGTAGGATATTAGGTAGTAGCAGTAGTTGTAGAGGAGGAGCTGACACTGAGAGATTAGGGCGGGGTAGGAAC AAGTCGGCGGTGTGTTCGAGTGATGTAAAATCTGGTGTACCCTTTAGAAGATCAGTGAGCGAAAGAACAGATTAA
AA sequence Show only first row Show all	>Lus10009273 pacid=23141875 polypeptide=Lus10009273 locus=Lus10009273.g ID=Lus10009273.BGIv1.0 annot-version=v1.0 MHVPGDLGFSSLALAALCLALTEVILLICPRPLRDVPSAKPSDIGTSGKCQIIHWRQGHKYNCHRPTILNDDGTDFGKEVAEKNEPDIHNASWEDAPTET SSIDRACSDSTWSPELASKTEEDTRVDFISHTTGMDSISDSSSTLFSGFSSPASSGELSDEASVSESISSNDAEGPDKQSSTDVTPDILRSGLNKRDQPE PLSPKFAKLADSSNYVSYMTNLNEVKKVSNSYNPSSPSPNIRATSELVIPAVVEDNNAQSNTVKTAKTKLSGSEPNLQFKFSMSRTDALSSQKLSEGKKF KSVEAPSREAAPRNFNVDAPRISKSANSDSYTLMKNGSSGGSKIIMDHELRAVSLSCSPHTSSNGGDVSKVAGSTFSAAKGSNLVASDNVTASHSSNSRL PPYASECNPCSTSGCVLPNVKVVKVEDVEGSPVTTNQSGTISSNSIGGLRLSMRKVVDQFRGPKSGRYSHKGLFPYDLFVKLYSHKVDLQPCGLINCGNS CYANAVLQCLLFTPPLTAYFVQGHHSIACATKHWCFICEFENLVLKAKEGRTPLSPISILSQLQNIGSNLGNGREEDAHEFLRYAIEAMHSVFLKEAGIK AVGSIEEETTLIGLTFGGYLRSKIKCMKCHYKSERQERMMDLTVEIEGDIGKLEDALRRFTSTEILDGENKYQCSRCQSYEKAKKKLTILKAPNILTIAL KRFQSGRFGKLNKSIRFPEILDLAPYMSGTSDKSPIYRLYAVIVHLDVLNASFSGHYVCYVKNSQNRWYKIDDSRVTTVELERVLTKGAYMLLYARCSPQ APWLIKNGTVAPDVKNKCSAPRIHSKGPSPRPAVEMQPGSVSQDDADNVESFYLKYHKLQRILEADSSSDNYSFTSSNSDEGSCSTDSTRDSTSVDDLSD YIFGGGWSSPYKKATDSDTSSSSSPLYTRHLPDSNTDRNASGFTETSSSRGADMEGGEYHPFYHADNGNHDYNNKNCRILGSSSSCRGGADTERLGRGRN KSAVCSSDVKSGVPFRRSVSERTD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24560		UBP16	ubiquitin-specific protease 16...		Lus10009273 [exp]	0	1
AT1G79730		ELF7	EARLY FLOWERING 7, hydroxyprol...		Lus10037558 [exp]	2.0	0.8992
AT3G06480			DEAD box RNA helicase family p...		Lus10009474 [exp]	3.7	0.8333
AT1G30010			Intron maturase, type II famil...		Lus10042828 [exp]	5.1	0.8803
AT4G10070			KH domain-containing protein (...		Lus10003519 [exp]	6.9	0.8583
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Lus10022741 [exp]	6.9	0.7975
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Lus10033597 [exp]	7.1	0.8374
AT5G24810			ABC1 family protein (.1.2)		Lus10026971 [exp]	7.1	0.8189
AT5G04290		SPT5L, KTF1	SPT5-LIKE, kow domain-containi...		Lus10038680 [exp]	10.9	0.8491
AT1G29350			Kinase-related protein of unkn...		Lus10025382 [exp]	11.5	0.8629
AT5G48030		GFA2	gametophytic factor 2 (.1)		Lus10035855 [exp]	11.6	0.8566

Compare expression of checked genes

Lus10009273 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.