Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01710 172 / 1e-50 Chaperone DnaJ-domain superfamily protein (.1) AT5G64360 169 / 1e-48 EIP9 EMF1-Interacting Protein 1, Chaperone DnaJ-domain superfamily protein (.1.2.3.4) AT5G09540 121 / 7e-32 Chaperone DnaJ-domain superfamily protein (.1) AT1G62970 111 / 1e-26 Chaperone DnaJ-domain superfamily protein (.1) AT4G19570 106 / 5e-25 Chaperone DnaJ-domain superfamily protein (.1) AT4G19580 102 / 1e-24 DNAJ heat shock N-terminal domain-containing protein (.1) AT3G06340 103 / 5e-24 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) AT5G53150 103 / 1e-23 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G37380 100 / 3e-23 Chaperone DnaJ-domain superfamily protein (.1.2.3.4.5) AT2G25560 100 / 6e-23 DNAJ heat shock N-terminal domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015891 [exp] 563 / 0 AT2G01710 310 / 2e-104 Chaperone DnaJ-domain superfamily protein (.1) Lus10038816 [exp] 134 / 3e-34 AT5G53150 540 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10014927 [exp] 127 / 7e-32 AT5G53150 535 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10008983 [exp] 125 / 5e-31 AT5G53150 509 / 3e-172 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10037698 [exp] 124 / 1e-30 AT5G64360 184 / 9e-51 EMF1-Interacting Protein 1, Chaperone DnaJ-domain superfamily protein (.1.2.3.4) Lus10015692 [exp] 123 / 1e-30 AT5G64360 179 / 5e-50 EMF1-Interacting Protein 1, Chaperone DnaJ-domain superfamily protein (.1.2.3.4) Lus10028842 [exp] 122 / 3e-30 AT5G53150 498 / 3e-167 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10012795 [exp] 115 / 1e-27 AT5G18750 311 / 2e-94 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10006380 [exp] 106 / 1e-24 AT5G35753 420 / 2e-136 Domain of unknown function (DUF3444) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G156100 [exp] 349 / 7e-119 AT2G01710 313 / 9e-106 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G105500 [exp] 326 / 5e-110 AT2G01710 308 / 1e-103 Chaperone DnaJ-domain superfamily protein (.1) Potri.017G044600 [exp] 137 / 2e-35 AT5G64360 189 / 3e-53 EMF1-Interacting Protein 1, Chaperone DnaJ-domain superfamily protein (.1.2.3.4) Potri.007G114800 [exp] 126 / 1e-31 AT5G09540 155 / 9e-43 Chaperone DnaJ-domain superfamily protein (.1) Potri.015G020200 [exp] 124 / 9e-31 AT5G53150 574 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.012G001100 [exp] 119 / 5e-29 AT5G53150 570 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.012G098800 [exp] 118 / 8e-29 AT5G53150 282 / 5e-84 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.015G097500 [exp] 117 / 1e-28 AT5G53150 487 / 4e-162 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.008G196201 [exp] 114 / 2e-28 AT3G06340 249 / 6e-77 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Potri.010G018800 [exp] 110 / 3e-26 AT5G18750 446 / 3e-142 DNAJ heat shock N-terminal domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10009275 pacid=23141846 polypeptide=Lus10009275 locus=Lus10009275.g ID=Lus10009275.BGIv1.0 annot-version=v1.0 ATGGACGATGATTCCAACGGAACTCCCAACAGAGCCGAGGCGGAACGCCTGCTTGGAGTCGCCGAGAAGCTCCTCCAGTCCCGCGATCTCAACGGTAGCA AGGATTTCGCCGTCCTTGCTCAGGAGACGGATCCCCTCCTCGACGGCTCAGATCAGATCTTGGCCGTCGCCGACGTCCTCCTCTCCTCCGACAAGAAGAT CGGAAACAGCCACCACGACTGGTACTCCATCCTCCAGCTCGATCCGCCCACCAACGACCTCGATCTCATCAAAAAGCAGTACCGGCGCCTCGCCCTCCTC CTCCACCCGGACAAGAACAAATTCCCCTTCGCCGATCAGGCCTTCAAGCTCGTCGCCGACGCCTGGGCTGTCTTGTCCGATTCCTCCAAGAAGTCTCCCT TCGAGAGCGAGTTCAGTTTGTTCACCAAGGTGGATTTGTCAAATTCAGACAAGTTGCCCGTCCGGAGGAGCCAGCGGGATTCCGACAGTAGCAGGAATAA CAATAACACTACTACTCCTAATGGAGCAGGTGATAATCCTAGAACTAGCGTCAATTCAGCTAATAGCTCTAGTAATAATAGCGGTTTGAACCGTGAGGAT CAGAGTCAGAGATCGGCTAGTAGAATGGCCTCATTTTGGACGATGTGCCCTTACTGCTACCTCATGTATGAGTACCCTAGGGTTTACGAGAATTGCTGTT TGAGATGCCAGAAATGCCAGAGAGCGTTTCACGCTGCTCTGATTCAGTCCTTGCCCCCTATGGTGCCTGGAAAGGATGCCTATTACTGCTCCTGGGGGTT CTTCCCTCTGGGATTTATGTTTGGGGGTGATGATGCCAATGGAAATAAAAATGCTCCGGGTTCAGGTGCTAGTGCTGCTGCTGCCTCTCCTGCTTCTGCT TCTGCCTTTGTTAATTGGATGCCACCTATATATGGCTCCGTGCAGCCGCAGCAGCAAGGCAGTGAAAAAAATGGCTTCCCTGCAACGGTTGCTCCGCCAT TTTCGATGTCTACACCGCCAGGCATACCACAACCAACAGTATGGAAAACTCCAAGCTCCACAGCAGGAACATCCTTGCCTGTTCGGGGGAGTTCAACTGG AGGGACTGGAAAGAAGAGAGGGAGGCCAAGGAAAAATCCCATATAA
AA sequence Show only first row Show all	>Lus10009275 pacid=23141846 polypeptide=Lus10009275 locus=Lus10009275.g ID=Lus10009275.BGIv1.0 annot-version=v1.0 MDDDSNGTPNRAEAERLLGVAEKLLQSRDLNGSKDFAVLAQETDPLLDGSDQILAVADVLLSSDKKIGNSHHDWYSILQLDPPTNDLDLIKKQYRRLALL LHPDKNKFPFADQAFKLVADAWAVLSDSSKKSPFESEFSLFTKVDLSNSDKLPVRRSQRDSDSSRNNNNTTTPNGAGDNPRTSVNSANSSSNNSGLNRED QSQRSASRMASFWTMCPYCYLMYEYPRVYENCCLRCQKCQRAFHAALIQSLPPMVPGKDAYYCSWGFFPLGFMFGGDDANGNKNAPGSGASAAAASPASA SAFVNWMPPIYGSVQPQQQGSEKNGFPATVAPPFSMSTPPGIPQPTVWKTPSSTAGTSLPVRGSSTGGTGKKRGRPRKNPI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01710			Chaperone DnaJ-domain superfam...		Lus10009275 [exp]	0	1
AT5G59950			RNA-binding (RRM/RBD/RNP motif...		Lus10024413 [exp]	2.0	0.8241
AT5G62640		AtELF5, ELF5	EARLY FLOWERING 5, proline-ric...		Lus10042169 [exp]	2.0	0.8570
AT5G62640		AtELF5, ELF5	EARLY FLOWERING 5, proline-ric...		Lus10004261 [exp]	3.2	0.8193
AT2G28380		DRB2	dsRNA-binding protein 2 (.1)		Lus10021471 [exp]	4.9	0.8204
AT3G26400		EIF4B1	eukaryotic translation initiat...		Lus10036874 [exp]	7.1	0.8220
AT3G60850			unknown protein		Lus10030268 [exp]	8.0	0.7436
AT4G00850		GIF3	GRF1-interacting factor 3 (.1)		Lus10027132 [exp]	9.5	0.7812
AT2G01630			O-Glycosyl hydrolases family 1...		Lus10034607 [exp]	14.4	0.8044
AT1G61150			LisH and RanBPM domains contai...		Lus10018464 [exp]	15.2	0.7983
AT5G63870		PP7, ATPP7	serine/threonine phosphatase 7...		Lus10020898 [exp]	15.5	0.7750

Compare expression of checked genes

Lus10009275 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.