Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24530 801 / 0 O-fucosyltransferase family protein (.1) AT5G65470 697 / 0 O-fucosyltransferase family protein (.1) AT3G26370 324 / 1e-104 O-fucosyltransferase family protein (.1) AT1G35510 319 / 2e-102 O-fucosyltransferase family protein (.1) AT2G01480 308 / 2e-98 O-fucosyltransferase family protein (.1) AT1G38065 302 / 5e-97 O-fucosyltransferase family protein (.1) AT1G38131 300 / 4e-95 O-fucosyltransferase family protein (.1) AT1G14970 299 / 7e-95 O-fucosyltransferase family protein (.1) AT1G29200 285 / 4e-90 O-fucosyltransferase family protein (.1.2.3) AT4G38390 284 / 3e-89 RHS17 root hair specific 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015890 [exp] 1024 / 0 AT4G24530 778 / 0.0 O-fucosyltransferase family protein (.1) Lus10002653 [exp] 701 / 0 AT5G65470 760 / 0.0 O-fucosyltransferase family protein (.1) Lus10012732 [exp] 694 / 0 AT5G65470 765 / 0.0 O-fucosyltransferase family protein (.1) Lus10003715 [exp] 316 / 2e-101 AT2G01480 897 / 0.0 O-fucosyltransferase family protein (.1) Lus10009450 [exp] 315 / 1e-100 AT1G35510 816 / 0.0 O-fucosyltransferase family protein (.1) Lus10013460 [exp] 310 / 2e-99 AT2G01480 868 / 0.0 O-fucosyltransferase family protein (.1) Lus10034606 [exp] 306 / 2e-97 AT2G01480 848 / 0.0 O-fucosyltransferase family protein (.1) Lus10036875 [exp] 319 / 4e-97 AT3G26370 935 / 0.0 O-fucosyltransferase family protein (.1) Lus10028080 [exp] 296 / 4e-95 AT1G38065 636 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G105800 [exp] 840 / 0 AT4G24530 807 / 0.0 O-fucosyltransferase family protein (.1) Potri.007G011000 [exp] 768 / 0 AT5G65470 784 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G185200 [exp] 322 / 5e-104 AT3G26370 905 / 0.0 O-fucosyltransferase family protein (.1) Potri.019G080900 [exp] 317 / 1e-101 AT1G35510 770 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G048500 [exp] 315 / 4e-101 AT3G26370 893 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G111500 [exp] 314 / 2e-100 AT2G01480 906 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G130600 [exp] 307 / 8e-98 AT2G01480 912 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G087300 [exp] 305 / 9e-97 AT1G38131 704 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G173500 [exp] 300 / 1e-94 AT1G38131 697 / 0.0 O-fucosyltransferase family protein (.1) Potri.011G068300 [exp] 298 / 7e-94 AT1G29200 737 / 0.0 O-fucosyltransferase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10009276 pacid=23141902 polypeptide=Lus10009276 locus=Lus10009276.g ID=Lus10009276.BGIv1.0 annot-version=v1.0 ATGAGGAGGGTGAAACAGTGGCTGTTCCACCATCAGAATCAGTCTCAAAGGATGGCATTTGCTGGGGTTTTCGCCATTCTCCTTCCTATTTTCTTCCCCA ATCTCTTCCGCCCTCTCGGCAGGGCCTCCCCTTCTCTCTTCTCTGAATGGATTGCTCCGAGACCACGGCATTTGCCTCTGCTCAAAGCTGCTTTAAATCG CCATATTCCAGTAAGACAGCAGTCTGATCCTTGGTCTCCTTTACCAAACCAAGGATGGAACCCGTGTAATGAACCACCAACTATTATGTCTTCTTCTTTA CCGACGAAATCGCAAGGGTATATACAAGTTTTCCTTGATGGAGGATTGAACCAGCAAAGAATGGGAATATGTGACGCTGTTGCAGTTGCTAAGATTCTCA ATGCAACTCTTGTTCTTCCGCATCTTGAATTGAACCCTGTTTGGCAAGATCCAAGCTCATTCGAGGACATTTTCGATGTGGATCATTTTATCCATGCTCT GTGTAACGAAGTCTCGATAGTTAAAGAGCCACCCGGTGACTATGCTTGGAGCACTAGAGAGTACTATGCTACTGGTATACGGCCGACTCGAATTAAAACC GCTCCTGTCCATGCCTCAGCTCAGTGGTATCTGGACAATGTCTTGCCTTTAATGCAGAGCTATGGAATTGTGGCCATTGCCCCATTTTCTCATCGTCTGG CATTTGATCAGTTGCCTACTGAAATCCAGCGCCTGCGATGTAAAGTTAACTTTGAAGCCCTGACTTTCACTCGTCATGTCAAAACGATTGGAGACTTGCT TGTTCATCGTCTACGCCATCCTTCTAGAAATCACCAAGATTTGGGGAGTGAGTTAAAAGAAAGCAATGATGATTCTGGAAAAGAAGGATCAGGGAAATAT GTAGTATTACATCTTCGCTTCGATAAAGATATGGCTGCTCACTCAGCCTGCGACTTTGGTGGAGGTAAAGCCGAAAAACTTGCACTGGCGAAGTATCGTC AAGTACTGTGGCAAGGAAGAGTATTGAACTCTCAGTTCAGAGATGATGAGTTGAGGGGTCAAGGGCGTTGTCCATTGACTCCCGAAGAGATTGGATTGTT GCTTGCAGCATTAGGCTTCAGTAATAATACTCGTCTCTATCTTGCATCCCACAAGGTTTACGGTGGAGAAGCAAGGATTGCTACTCTGAAGCAGTTATAC CCTTTGATGGAAGATAAGAAAACGCTTGCTTCCGCAGAAGAACTGGCTAAGGTTGAAGGGAAAGCTTCTCTGTTGGCCGCAGTTGATTATTATGTTAGCT TGAAGAGCGACATATTCATATCTGCTTCACCTGGAAACATGCACAATGCTCTGGTGGGGCACAGAGCGTATCTAAACATGAAGACGATAAGGCCAAACAT GGTGTTGTTGGGGCCATTGTTCCTGAACAAGAGCATGGAATGGGCAGACTTCGAAGCTGCTGTACTGAGTGGTCACAGAAACAGACAGGGTCAGATAAGG TTGAGAAAGGAGAAGCAATCTATATTCACGTATCCTGCTCCTGATTGTATGTGTAAAATCACAAGTTAG
AA sequence Show only first row Show all	>Lus10009276 pacid=23141902 polypeptide=Lus10009276 locus=Lus10009276.g ID=Lus10009276.BGIv1.0 annot-version=v1.0 MRRVKQWLFHHQNQSQRMAFAGVFAILLPIFFPNLFRPLGRASPSLFSEWIAPRPRHLPLLKAALNRHIPVRQQSDPWSPLPNQGWNPCNEPPTIMSSSL PTKSQGYIQVFLDGGLNQQRMGICDAVAVAKILNATLVLPHLELNPVWQDPSSFEDIFDVDHFIHALCNEVSIVKEPPGDYAWSTREYYATGIRPTRIKT APVHASAQWYLDNVLPLMQSYGIVAIAPFSHRLAFDQLPTEIQRLRCKVNFEALTFTRHVKTIGDLLVHRLRHPSRNHQDLGSELKESNDDSGKEGSGKY VVLHLRFDKDMAAHSACDFGGGKAEKLALAKYRQVLWQGRVLNSQFRDDELRGQGRCPLTPEEIGLLLAALGFSNNTRLYLASHKVYGGEARIATLKQLY PLMEDKKTLASAEELAKVEGKASLLAAVDYYVSLKSDIFISASPGNMHNALVGHRAYLNMKTIRPNMVLLGPLFLNKSMEWADFEAAVLSGHRNRQGQIR LRKEKQSIFTYPAPDCMCKITS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24530			O-fucosyltransferase family pr...		Lus10009276 [exp]	0	1
AT5G16210			HEAT repeat-containing protein...		Lus10028491 [exp]	5.1	0.8623
AT1G57600			MBOAT (membrane bound O-acyl t...		Lus10013485 [exp]	8.7	0.8502
AT4G31590		ATCSLC5, ATCSLC...	CELLULOSE-SYNTHASE LIKE C5, Ce...		Lus10026923 [exp]	9.2	0.8509
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Lus10013369 [exp]	11.5	0.8472
AT3G01810			unknown protein		Lus10041590 [exp]	20.2	0.8201
AT2G03060	MADS	AGL30	AGAMOUS-like 30 (.1.2)		Lus10026613 [exp]	20.9	0.8108
AT1G50710			unknown protein		Lus10032639 [exp]	21.0	0.8196
AT2G39750			S-adenosyl-L-methionine-depend...		Lus10040268 [exp]	22.4	0.8300
AT5G54440		CLUB, AtTRS130	CLUB (.1)		Lus10021680 [exp]	25.1	0.8415
AT2G45540			WD-40 repeat family protein / ...		Lus10015858 [exp]	27.7	0.8269

Compare expression of checked genes

Lus10009276 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.