Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58200 661 / 0 MSL3 MSCS-like 3 (.1.2) AT5G10490 640 / 0 MSL2 MSCS-like 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002652 [exp] 648 / 0 AT5G10490 780 / 0.0 MSCS-like 2 (.1.2.3) Lus10012733 [exp] 532 / 0 AT1G58200 630 / 0.0 MSCS-like 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G154000 [exp] 780 / 0 AT1G58200 734 / 0.0 MSCS-like 3 (.1.2) Potri.002G105900 [exp] 776 / 0 AT1G58200 729 / 0.0 MSCS-like 3 (.1.2) Potri.007G011100 [exp] 663 / 0 AT5G10490 714 / 0.0 MSCS-like 2 (.1.2.3) Potri.005G107200 [exp] 61 / 9e-12 AT5G10490 77 / 2e-18 MSCS-like 2 (.1.2.3) Potri.014G088200 [exp] 58 / 2e-08 AT4G00290 580 / 0.0 Mechanosensitive ion channel protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00924 [flax] [poplar] MS_channel Mechanosensitive ion channel
Representative CDS sequence Show only first row Show all	>Lus10009277 pacid=23141898 polypeptide=Lus10009277 locus=Lus10009277.g ID=Lus10009277.BGIv1.0 annot-version=v1.0 ATGGCCTGTATGAGTGCTCTCCACTTATCTCGAGAGTTGAACATTTGTAATCGACCGAAGCATTCCATTCATTCAAGCGGCGTTTCAGGAAGTGGCAGGG TTGGTGTTCTTAGCACCAATCTTCCTTCTCATGCTTTCAGGCAGGGTGCTTGGAGTATCCACCGTTCAAACAGCATACACCGGCCAATAAACCCTACTCG CTCCAGATTAAAGATTTTTGTCTGCCGATCTGTTCTAACGCCTGGTGGAGGGAATGTGATTCCTATTCTCAAATCGGCTGCGACAGTCGTAACAAGGTTA TATGATGCTCTACTCGGAAATCGATTGCTGCTGAAGTTAATTCCTGTTGTTACTATCATTGCTTTTGCTTCCTGGGGTGTTCAGCCACTTGCCCATTTGG GAAGGGCAATTTTTCCCAATAAATCTGACGACAACACAAACCTAAGTGGCACTTACTATGTAATTACCACTTATCTTAAGCCACTTCTGATGTGGACAGG AGCTATGCTCATCTGCAGAGCTTTGGATCCAGTAGTTCTCCCATCTCAGGCAAGCGAGGCTGTAAAGCAACGTCTTCTAACATTTGTGCAATCATTATCT ACTGTGCTGACTTTTGGATACTGTTTATCAAGCTTGATTCAACAGGGACAACAGTTCTTCACTATGTCAAATGAGTCCAGTGATGGTTCTAGAAATTTAG GTGTGAGTTTTGCTGGAAAAGCCATTTATACAGCTGTTTGGGTGGCTGCTATATCGTTGTTCATGGAATTGTTAGGATTCTCTACCCAAAGATGGCTGAC AGCTGGCGGTCTTGGCACAGTGTTGCTCACCCTTGCTGGCCGCGAGATATTCACAAACTTCCTTTCGAGTGTAATGATCCATGCAACGCGGCCGTTTGTT TTGAATGAGTGGATTCAGACAAAGATTGAAGGTTATGAAGTTTCTGGAACAGTTGAGCATGTGGGATGGTGGTCACCGACGATTATTAGAGGGGATGACC GTGAGGCAGTTCACATTCCTAACCATAAGTTCACGGTTAGTGTTGTGAGAAATCTTACTCAGAAGAGTCACTGGCGCATCAAGACCCATTTCGCCATCAG TCACTTGGATGTCAACAAAATAAATAATATAGTGGCCGACATGCGCAAGGTTCTGTCTAAAAATCCTCAAGTAGAACAGCAAAGATTACACAGAAGAGTT TTCCTTGAGAACATTAATTCAGAGAATCAGGCTCTTATGATACTTGTTTCATGCTTTGTCAAAACCTCGCGTTTCGAGGAGTACCTCTGCGTTAAGGAAG CAATACTCTTGGACCTTCTTCGAGTCATAAGACATCATGGCGCCCGGCTTGCTACACCCATTCGTACAGTCCAAAAATTTTATAGTGATCCCGATCTGGA TAACATTCCCTTTTCAGAGACCATCTTCACCAGATCAGAAGCCACTCCTGACCGCCCCCTGTTGCTTATTGAACCTTCTTATAAAATTAATGGCGAGGAG AAAGTTAAACCATCTGGCCGCGGAGTGCGCACTAGTGACGACAAGGATGCCAAAGTCGATGAAGCTCCCTCGACATCAACTACTACAGAAGCAGTCGACC CGCGATTAAATAAAGTGGGCGCCAGTCTTGCACCATTGCCCTCCAGTCCTGACACCAGCAATGCTTCATCAGTTGAAAAGAAAGAAAAGGACTCGAAAAT GGCAACACCAGACGGCAAACCTCTTACTAGTCCAGTATCTAGTGGCAATGAACAACCTAGTAAGCAGGAGGTTATCGAGAAGTCTGTTGCATCACGACAT TCATTGGAGGAGAACATAGTGCTTGGAGTTGCGCTGGATGGTTCAAAGCGAATACTCCCAATTGAGGAAGAAGAGGAAGAAAAAGAAGACATAATAGCAG AGACAAAGGAACAGGAGCTTTCTGCTGCTAGCAGGACTGGAACCGGATCACCTCCAACTGTTACGGCAGATAAAATGGACAAGTCGGATATTGTTGACAA ATCCCCCTAG
AA sequence Show only first row Show all	>Lus10009277 pacid=23141898 polypeptide=Lus10009277 locus=Lus10009277.g ID=Lus10009277.BGIv1.0 annot-version=v1.0 MACMSALHLSRELNICNRPKHSIHSSGVSGSGRVGVLSTNLPSHAFRQGAWSIHRSNSIHRPINPTRSRLKIFVCRSVLTPGGGNVIPILKSAATVVTRL YDALLGNRLLLKLIPVVTIIAFASWGVQPLAHLGRAIFPNKSDDNTNLSGTYYVITTYLKPLLMWTGAMLICRALDPVVLPSQASEAVKQRLLTFVQSLS TVLTFGYCLSSLIQQGQQFFTMSNESSDGSRNLGVSFAGKAIYTAVWVAAISLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFV LNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVSVVRNLTQKSHWRIKTHFAISHLDVNKINNIVADMRKVLSKNPQVEQQRLHRRV FLENINSENQALMILVSCFVKTSRFEEYLCVKEAILLDLLRVIRHHGARLATPIRTVQKFYSDPDLDNIPFSETIFTRSEATPDRPLLLIEPSYKINGEE KVKPSGRGVRTSDDKDAKVDEAPSTSTTTEAVDPRLNKVGASLAPLPSSPDTSNASSVEKKEKDSKMATPDGKPLTSPVSSGNEQPSKQEVIEKSVASRH SLEENIVLGVALDGSKRILPIEEEEEEKEDIIAETKEQELSAASRTGTGSPPTVTADKMDKSDIVDKSP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G58200		MSL3	MSCS-like 3 (.1.2)		Lus10009277 [exp]	0	1
AT2G39950			unknown protein		Lus10028266 [exp]	3.0	0.9261
AT1G44790			ChaC-like family protein (.1)		Lus10028029 [exp]	4.4	0.8748
AT2G39950			unknown protein		Lus10040223 [exp]	7.5	0.9115
AT4G26260		MIOX4	myo-inositol oxygenase 4 (.1.2...		Lus10035005 [exp]	12.1	0.8490
AT3G54440			glycoside hydrolase family 2 p...		Lus10024155 [exp]	12.2	0.9058
AT1G68490			unknown protein		Lus10038934 [exp]	13.5	0.8816
AT3G56680			Single-stranded nucleic acid b...		Lus10038997 [exp]	21.4	0.8927
AT3G02555			unknown protein		Lus10027224 [exp]	21.5	0.8604
AT3G01640		ATGLCAK	ARABIDOPSIS THALIANA GLUCURONO...		Lus10022282 [exp]	24.2	0.9067
AT4G27450			Aluminium induced protein with...		Lus10011191 [exp]	24.8	0.8930

Compare expression of checked genes

Lus10009277 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.