Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60580 152 / 4e-45 C2H2ZnF C2H2-like zinc finger protein (.1) AT1G02030 142 / 2e-41 C2H2ZnF C2H2-like zinc finger protein (.1) AT2G45120 101 / 2e-25 C2H2ZnF C2H2-like zinc finger protein (.1) AT3G53600 79 / 7e-18 C2H2ZnF C2H2-type zinc finger family protein (.1) AT3G19580 80 / 1e-17 C2H2ZnF AZF2 zinc-finger protein 2 (.1.2) AT1G27730 79 / 1e-17 C2H2ZnF ZAT10, STZ salt tolerance zinc finger (.1) AT5G43170 78 / 1e-17 C2H2ZnF AZF3 zinc-finger protein 3 (.1) AT2G28710 74 / 2e-16 C2H2ZnF C2H2-type zinc finger family protein (.1) AT5G61470 75 / 1e-15 C2H2ZnF C2H2-like zinc finger protein (.1) AT5G67450 74 / 2e-15 C2H2ZnF AZF1 zinc-finger protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015888 [exp] 289 / 3e-99 AT3G60580 126 / 3e-35 C2H2-like zinc finger protein (.1) Lus10032848 [exp] 86 / 1e-19 AT1G27730 149 / 1e-43 salt tolerance zinc finger (.1) Lus10038929 [exp] 82 / 2e-18 AT1G02030 101 / 2e-25 C2H2-like zinc finger protein (.1) Lus10008523 [exp] 81 / 1e-17 AT3G60580 107 / 3e-27 C2H2-like zinc finger protein (.1) Lus10027220 [exp] 80 / 2e-17 AT1G02030 99 / 1e-24 C2H2-like zinc finger protein (.1) Lus10033798 [exp] 79 / 3e-17 AT1G27730 146 / 3e-43 salt tolerance zinc finger (.1) Lus10004316 [exp] 77 / 1e-16 AT5G04340 134 / 3e-38 COLD INDUCED ZINC FINGER PROTEIN 2, zinc finger of Arabidopsis thaliana 6 (.1) Lus10014631 [exp] 76 / 3e-16 AT1G27730 144 / 4e-42 salt tolerance zinc finger (.1) Lus10004724 [exp] 76 / 9e-16 AT3G60580 108 / 2e-27 C2H2-like zinc finger protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G143800 [exp] 150 / 3e-43 AT3G60580 199 / 1e-61 C2H2-like zinc finger protein (.1) Potri.014G066100 [exp] 129 / 2e-35 AT3G60580 176 / 1e-52 C2H2-like zinc finger protein (.1) Potri.001G125900 [exp] 98 / 5e-24 AT3G60580 98 / 1e-23 C2H2-like zinc finger protein (.1) Potri.001G157700 [exp] 85 / 6e-19 AT3G60580 159 / 2e-46 C2H2-like zinc finger protein (.1) Potri.003G077200 [exp] 85 / 6e-19 AT3G60580 151 / 2e-43 C2H2-like zinc finger protein (.1) Potri.002G119300 [exp] 79 / 3e-17 AT1G27730 186 / 8e-59 salt tolerance zinc finger (.1) Potri.009G027700 [exp] 73 / 1e-15 AT5G59820 126 / 5e-37 RESPONSIVE TO HIGH LIGHT 41, C2H2-type zinc finger family protein (.1) Potri.008G051200 [exp] 72 / 1e-15 AT2G28710 130 / 8e-39 C2H2-type zinc finger family protein (.1) Potri.009G089400 [exp] 73 / 3e-15 AT3G19580 120 / 6e-33 zinc-finger protein 2 (.1.2) Potri.010G209400 [exp] 72 / 4e-15 AT2G28710 129 / 2e-38 C2H2-type zinc finger family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009278 pacid=23141899 polypeptide=Lus10009278 locus=Lus10009278.g ID=Lus10009278.BGIv1.0 annot-version=v1.0 ATGGAAAAGCACAAGTGCAGATTCTGCTTCAAGTTTTTCCCCAACGGAAGCGCTCTGGGAGGTCACATGAGGTCTCACATGATCAGCCTCCAAACATCAT CGTCATCATCATCAGAAGAAGAAATCCAGTCATCATCATCGTCGGGAGTCGATAAATTCGCGAATCTCTTCTTCTATGGACAGAATTCAAATGAGTCGTC AGAGTGGTCCAAAGATCCGAATCGACGGCGATCGAAGCGGATGAGGAAGAAGCAGATTGAGGAGGCGGAGGCAGCAGAACGACAAGTGAGCTCAATCTCT GATGCGAGGACAAATGAGGAAGACTTGGCTTTCAGCCTGATGATGTTGTCTAGGGACAGATGGAGACCGCCACTAGAAATCGAAATCGACGAAGATGAAG AAGGAGAAGAAGAAGAAGAATGTGAGATCATCAAGAGGGGCACAAGTGATAATAACAGGACATACAAGTGTGGGACGTGCGAGAAAGTGTTCAAATCGTA CCAGGCATTGGGTGGGCATAGAGCGAGTCACAAGAAAGAGAAGCTTCTCCACCATGTTATTGATCATCGGCCACCGCGGCCGCAAGTTGACAAGTTACAC GAATGCCCCTACTGCGAGCGAGTTTTTTCATCGGGGCAAGCTCTAGGTGGGCACAAGAGATCCCATTTTATTGGAGAATCAGCTAATTCTATTCGTTGCT CCAAGTATTTAGGTACAATTGATCTGAACTTACCAGCTCTAGGCTGA
AA sequence Show only first row Show all	>Lus10009278 pacid=23141899 polypeptide=Lus10009278 locus=Lus10009278.g ID=Lus10009278.BGIv1.0 annot-version=v1.0 MEKHKCRFCFKFFPNGSALGGHMRSHMISLQTSSSSSSEEEIQSSSSSGVDKFANLFFYGQNSNESSEWSKDPNRRRSKRMRKKQIEEAEAAERQVSSIS DARTNEEDLAFSLMMLSRDRWRPPLEIEIDEDEEGEEEEECEIIKRGTSDNNRTYKCGTCEKVFKSYQALGGHRASHKKEKLLHHVIDHRPPRPQVDKLH ECPYCERVFSSGQALGGHKRSHFIGESANSIRCSKYLGTIDLNLPALG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45120	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10009278 [exp]	0	1
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10010863 [exp]	1.0	0.9367
AT2G43590			Chitinase family protein (.1)		Lus10035618 [exp]	2.0	0.8361
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10035900 [exp]	7.3	0.7848
					Lus10033891 [exp]	7.7	0.7168
AT1G07260		UGT71C3	UDP-glucosyl transferase 71C3 ...		Lus10010474 [exp]	8.0	0.7450
AT1G04520		PDLP2	plasmodesmata-located protein ...		Lus10028049 [exp]	8.5	0.7848
AT5G16100			unknown protein		Lus10020810 [exp]	8.7	0.6800
					Lus10014737 [exp]	9.5	0.7848
AT3G04060	NAC	ANAC046	NAC domain containing protein ...		Lus10033699 [exp]	10.4	0.7848
					Lus10019558 [exp]	11.2	0.7848

Compare expression of checked genes

Lus10009278 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.