Lus10009279 [FLAX]

| External link |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Symbol | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
Arabidopsis homologues
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
Paralogs
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
Poplar homologues |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
| PFAM info |
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
Representative CDS sequence |
>Lus10009279 pacid=23141871 polypeptide=Lus10009279 locus=Lus10009279.g ID=Lus10009279.BGIv1.0 annot-version=v1.0
ATGTCCAAACTGAACCCTGCTATTTCGTCGCCCAAACCTCCGCTCCCATCTCTCGCTAATCTGTCCAACTCTCTCATCATGACTCAGGACCAACTCGTCG
ACTCTCTCACAGCCCATATCTCCCTCTACCACTCCCATTCCCATTCCCGATCGTCCCCAAACCCTAATTCCACTCCTCGCTCTTCTATCCTCAAATGGTT
CTCCTCCCTCTCCGTTCCTCAACGTCAAGCTCACCTCACCACCGTCAATCGCAAATTCACTCAACTTTTGATTCAAATGCTCGGGAAGCTTCGGACGAAC
GGCTACGGCCGGTTCATCATACTTCCCGACTTGCCCTCAGGCGATCTCCCAAGCCTCTGCTACAAGAAGTCAACTGGCCTCTTGTCCCGGACTGCCGAGT
CCAACCATTCAGAAAGGTTAGTTTTCGAGTCCACTCGGCTTTTCGGATCCAGAGAAGGGGAAAACGCGGAGGAATGTTCTAGTTCTGTGAATTGCTTGGA
TTCGATGACGGTGTGTGAAGAGCTGGTAGAGAACGTTGAGAATTTCGTCCACACCATGGATGATGTATCTGGTGGAGGGTTCTTGAGGGGGGAAGAGAGT
GAATTGGGAGCTGAGTGGGTGGAATTGGAGTGGCTGAAGGCGAGAGGCTACTATAGCATTGAGGCTTTTGTGGTAAATCAGCTGGAGGTGGCGCTTAGGC
TGGCTTGGCTTAACTCTGGTGGCGCTAACAAGAAAAGAGGGGTGAAGTTGAAGGAGAAATTGAGCATTGCGGGAGTAGCGGCCAATGTGTTTTGGAGGAA
GAAAGGCTGCTTAGATTGGTGGGCGAAATTGGATGTCGAACATAGGAGGAAAATCATAACGTTTGTACTTGGGAAAGCTTCCAAAACATTGACTCTTGAG
ATTCTAAAGGAAGCGAGTGTTGCGCTTGAAGATCGGAGGTGGCTTTTTAGACTAGGACCAGAACAACCAAGAAGGCATATCTTTGCTGAATCATCTCAAA
GGCATTTACCTAACCTTCCGGCTGATGCAGAATTTGGCTTGTTCTTTATGCCAGCTCCTGTTCCTGGGAAACCTGCCTCCATAACTAACATGTTTAATAG
ATTGTCCGTGATGCGGGAAATTTTGAGTTTGACATCTCCATATTGGTATGGCGATAGTGGTTTATCAGCAGTATTTTTTACCACTTTGACTTCTGTCAAT
ATGATATCTGATTGTATGATGCGAAAATTGCGAGGACATGTTATGGCCATATCACTAGATTACACTAAGCTTGAACTCCTTGAGGAAGGAGCTTTCGTGT
CTCCAAAAAAACATAAAGAAAAAAAGCATTCTGCAGCTAAACAAACGAAGAAAGGAAAAACTAAGAATGCGAAAAAGCTAAATCATGCAGCGAGGAAGGA
GCTGGACGAATTGTCCTTGAAGAAATCTTTGAAGGATCCTCAACCTGTTGTCCTCTGCACTGAGAGGGCAGACTATTTGGAGTGCAAAAGGATGCCTTGT
ACTCATGATGTAGTGAGAAATCAAGAACACTCTCAAGGACCACCTCTTGGAAAAGGAGGTCAGACCGCAACAAGGAAGAAAAGAGGAAGAAGTAAACACA
GGAATTCTGGCTACAAATATAAAATGGAAGGGACATATTCTAATGGCCCAGTTGCGGAACATCCACCTCGCAATCTCAACTACATAAGTGAAGCCACAGA
GCTGGAGAGGAGATTTGATGATTCAAATGTCCATAATGTGTCAGGTGACAGTTCAGCTGATGGCAACTATATTGCATTAAATGCAACCATAAAGAGTTCT
GCTGATGAATCTTGCATGGAGGACGGCCAAGGTTCTGAGGAAAATGGTGATGTTGGCCATATGAGTGATGAGCCTCATGGAGATTCACTTCGTGACCATT
CAGTAGGAGTTCGGACTAGGAAGATTGACATTAATGAAACATCTCAAGATTCACCACTGTCAGAAAATAAAGCTGTTTCCAGTGATATTAACGTGCAAAG
TCAAAAGGCAAAGGACAACATTTCACTTGCTAATAAACCAGTGAAGAACCTGAAAGAAAATTTGGCCATGTTTCACAAGCGAGGGATTGAAAACTTTTCT
GCTGCTGGACATATAGGACATTCTCAGTGCTTTCCTTCTGAGGGTCCCAGTTTAGGTCATGTATATTTTCCCTCATTTAGTGCAAATCTCCCACCTGCTA
CTGACCGACTGCACCTAGATGTTGGCTTCAACTGGCATAATCGTATGCGTCAACCTTTTGTTCCAACTGTGCATCAAACTGGAAGTTCGCCTGTTGAAGT
TGGGTGCAACAAGATGATCGCCCATCCTCTGCCAATGAGTTTAGATTGGCCTCCGATGGTTAGACGAGCACGCAGCTTAACTCCATCTGTGACATGTAAT
TATGATTCTAGTTTTATTTCTAGAAGGCAAGCTGCTTTCCAGCAGAGTTTCACTGCTCAAAATGTAAAGTTTAATGGGAAAAAGATTGATGATGACGTAA
GTTATTCTGGAGATATCTTGGACCTGCCTGAAGCAACAAATGGTCAGGAATCTATGGATGAATATGAAAGTCACTGGCTATCGGAAGAAGAGTTTGAGGT
TCATGGAATAGACTACAATCAGTACTTTGGTGGTGGTGTAATGTACTGGAACCCTTCTGATTATCCAGGATTTTCTCGGCCTCCGTCTCTTAGTTCAGAT
GATAGCTCATGGGCATGGCATGAAGCAGACATGAATAGAGCTGTTGATGATATGGTTGCCTTTTCATCATCTTATAGTACAAATGGTCTGACATCTCCAA
CTGCTGCCTCATTTTGTTCTCCTTTTGAGTCTTTGGGGTCTGGTCACCAATCACTTGGTTATGTAGTATCTGGGAGTGAAGTAACTGGTAAAGTCCCACA
CTCCACAACACTAGACACAGCCAAGGAGGAAAAGGTATCTGGATCTGTGACTAGTTTGTCTGGTGACCTTGAAGGGAAGGTGGGAGATGCCTTTCCCTAC
CCAATTTTGCGGCCTATCATCATTCCAAACATCTCAAGAGACAAACCTCGGGCAGATATCAAACGTGCCTTTGAGCATAAGAGCCCATGCATCCCTCCTT
CAAGGAGGGAACAACCTCGGATAAAGAGGCCACCATCACCAGTTGTGCTTTGTGTTCCTAGGGCTCCTCGTCCTCCCCCACCCTCTCCTGTGAGTGATTC
AAGAAAACAAAGGGGTTTTCCAACTGTAAGGTCAGGTAGCTCCAGTCCTAGACATTGGGGTATGAGGGGTTTCTATCATGATGGTATTAACGTGGAGGAA
GCATGTGTACGCATGGATGGAGCCGAAGTTGTTTGGCCTTCTTGGAGAAATAAAAATCTAGCAACACGTCCTATGATTCAGCCTCTTCCTGGAACTTTGT
TGCAAGACCGTTTGATAGCAATATCCCAATTAGCCCGTGACCAAGAGCATCCAGATGTGACATTTCCCGTACAACCTCCTGATTTAGTGAAGTGTCCTGC
AAGGAAAACTTCTCTTTCTCTGATGCATGCCCTTCTTCATGATGAAATCGACATCTTCTGCAAGCAGGTTGCTGCAGCTACTATGGCTCGTAAGCCTTAC
ATTAATTGGGCTGTTAAACGAGTCGCTAGATCATTGCAAGTCCTATGGCCCAGATCCAGAACGAATGTCTTTGGTTCAAATGCAACTGGACTGTCCCTTC
CTTCCAGTGATGTTGACCTTGTCATTTCTCTACCTCCAGTGAGGAATTTGGAACCTATAAAAGAAGCAGGAATTTTGGAGGGTCGTAATGGTATTAAAGA
GACATGTCTTCAGCATGCAGCAAGGTATCTTGCCAACCAGGAGTGGGTAAAGAGTGATTCACTGAAAACTGTTGAAAATACAGCTATTCCCATCATCATG
CTCGTTGTGGAAGTTCCTAGTGATTTAAGCTCATCCAGTTCCTCTGCTGTACAAAAGGAGTGTATCACTAGTGGCACAGATCCTCATCTAGAGACCGAAG
TCCTCAGTTTGGAGGAGTTACCTTCTTTGGAATATTCAGAAACACAAGGTGATAAGCTGAAGGATGTTGAATCAATACGTCTTGACATCAGTTTCAAGTC
TCCATCTCACACTGGGCTCCAGACCACTGAGCTGGTGAAGGAGCTGACAGAACAGTTTCCAGCTGCAACCCCTCTTGCCTTGGTACTGAAAAAGTTTTTG
GCAGATCGTAGCCTTGATCAATCCTACTCCGGTGGTTTGAGTTCCTATTGCCTGCCTCCCCATTGTTTGCTTAGAACCCTAAGTGAAGGAATTGGGGACT
TAGCATATCTTCTGATATCTGTAATACTTATTACACGCTTTTTACAGCATGAGCATCACCTTGGCCGTTCTGTTAATCAAAACTTTGGCGGTCTTCTTAT
GGATTTTCTTTACTTCTTCGGAAATGTGTTTGATCCTCGCCAAATGCGCATCTCAGTGCAGGGTTCAGGTGTTTATATGACTAGAGAAAGAGGTCAAAGT
ATTGATCCCATACACATCGACGATCCTTTTTTTCCGACAAATAATGTGGGGAGGAACTGCTTCCGGATGGTCAAAATACTCTTGCCTAGGTTTCGCTGGA
GCTCAAGAGCGCCAAAACCAGAGCTTGCCGTTTGTAGCATTGTAGTTGATAAGCTGATTAGACTTGGTTTCTTACAATTTCCAGCATTCTATCCCCGCTC
TTGCCTGCCATTTCCAGCTCCATTGGTCCGAAACAGAGGACATATTATTTCAGGACACCTCTTATACCATATTCATTGGCTCGACGTGTCCATCTACACG
ACCTATACCATTTCCTCCCCTTCGCTGGCCAGTGTTCGTGGATGCGGGGCAAAGCACAATAGTAGCGGCGACAACAATGGGTCCAACAGCTTGGAATTGG
TGGTCAAAGATTCTCCCAGGTCAATTATTCGGTCTTCTGGTCATGTTATTCTTCACATCACTGATCCTTTAACTTTGGAAGCTACGGCCTTCAGTCAAAC
TCTTGATTTCACTTCGCGATGGCACCAAGGTCCAACCCCGATTCATTCCGAGTCAACTGAGGTGGATAACCCCGCAGCCAACAGCCGAACAGTGTGGGAG
GCACACAAGGCTCTTTATTATCCCGATCCTCTTCGTAGACCGACACCGTTGTTCCGCTACCTTTTTTTACCTAGCTCCACCACAAATCCCCTTTCCCGCA
GCCGGATTCTTACTCACTCTCCGATCGGCTCACAGTCTCAAAAAATGAGCTCCGACGGCCTCCTCACCATCGAGCCTCAAGATCTGCAGTTTCCATTCGA
ATTGAAGAAGCAGATCTCCAGTTCGCTGCAGCTATCCAACAAGACCGACAATTATGTGGCGTTCAAGGTTAAGACGACGAATCCAAAGAAGTACTGTGTG
AGGCCTAACACTGGCGTTGTGCAGCCTCGGTCTGCATGTGATGTCATAGTTACTATGCAGGCACAAAAAGAGGCTCCTGTTGATATGTTGCAGTGCAAAG
ACAAGTTTTTATTACAGAGCGTTGTGACGAGTCCTGGGGCTACCGCCAAGGATGTCTCCGCAGAGATGTTCAATAAGGAGGCAGGGCATCATGTCGAGGA
GAGCAAGTTAAGGGTTGTTTATGTTGCTCCACCAAGACCACCATCACCAGTTCGTGAAGGATCAGAGGAAGGTGAAGAACCTATAGCTTCTCTTTCCGAC
AATGGGGGTGTTCATCCAGTGGAGCATACATCGGTTTCCAAACCGGAGCTTGGTCGTAGAGTTGAGCCTCGTGATAATTCCTTGGAGGCACGTGCTCTTA
TCTCCAAGCTAACTGACGAGAAAGATTCTGTTATCAAGCAAAACAAGCTGTTACAGAGGGAACTGGAGCAACTACGGAATCAAACAAGCAGAAACCGCAT
GGGCATCCCGATCACATATGTGGTTATCGTAGCCCTTTTAGGAATCTTTTTGGGGTACTTGCTGAAAAGGGCATGA
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
AA sequence
|
>Lus10009279 pacid=23141871 polypeptide=Lus10009279 locus=Lus10009279.g ID=Lus10009279.BGIv1.0 annot-version=v1.0
MSKLNPAISSPKPPLPSLANLSNSLIMTQDQLVDSLTAHISLYHSHSHSRSSPNPNSTPRSSILKWFSSLSVPQRQAHLTTVNRKFTQLLIQMLGKLRTN
GYGRFIILPDLPSGDLPSLCYKKSTGLLSRTAESNHSERLVFESTRLFGSREGENAEECSSSVNCLDSMTVCEELVENVENFVHTMDDVSGGGFLRGEES
ELGAEWVELEWLKARGYYSIEAFVVNQLEVALRLAWLNSGGANKKRGVKLKEKLSIAGVAANVFWRKKGCLDWWAKLDVEHRRKIITFVLGKASKTLTLE
ILKEASVALEDRRWLFRLGPEQPRRHIFAESSQRHLPNLPADAEFGLFFMPAPVPGKPASITNMFNRLSVMREILSLTSPYWYGDSGLSAVFFTTLTSVN
MISDCMMRKLRGHVMAISLDYTKLELLEEGAFVSPKKHKEKKHSAAKQTKKGKTKNAKKLNHAARKELDELSLKKSLKDPQPVVLCTERADYLECKRMPC
THDVVRNQEHSQGPPLGKGGQTATRKKRGRSKHRNSGYKYKMEGTYSNGPVAEHPPRNLNYISEATELERRFDDSNVHNVSGDSSADGNYIALNATIKSS
ADESCMEDGQGSEENGDVGHMSDEPHGDSLRDHSVGVRTRKIDINETSQDSPLSENKAVSSDINVQSQKAKDNISLANKPVKNLKENLAMFHKRGIENFS
AAGHIGHSQCFPSEGPSLGHVYFPSFSANLPPATDRLHLDVGFNWHNRMRQPFVPTVHQTGSSPVEVGCNKMIAHPLPMSLDWPPMVRRARSLTPSVTCN
YDSSFISRRQAAFQQSFTAQNVKFNGKKIDDDVSYSGDILDLPEATNGQESMDEYESHWLSEEEFEVHGIDYNQYFGGGVMYWNPSDYPGFSRPPSLSSD
DSSWAWHEADMNRAVDDMVAFSSSYSTNGLTSPTAASFCSPFESLGSGHQSLGYVVSGSEVTGKVPHSTTLDTAKEEKVSGSVTSLSGDLEGKVGDAFPY
PILRPIIIPNISRDKPRADIKRAFEHKSPCIPPSRREQPRIKRPPSPVVLCVPRAPRPPPPSPVSDSRKQRGFPTVRSGSSSPRHWGMRGFYHDGINVEE
ACVRMDGAEVVWPSWRNKNLATRPMIQPLPGTLLQDRLIAISQLARDQEHPDVTFPVQPPDLVKCPARKTSLSLMHALLHDEIDIFCKQVAAATMARKPY
INWAVKRVARSLQVLWPRSRTNVFGSNATGLSLPSSDVDLVISLPPVRNLEPIKEAGILEGRNGIKETCLQHAARYLANQEWVKSDSLKTVENTAIPIIM
LVVEVPSDLSSSSSSAVQKECITSGTDPHLETEVLSLEELPSLEYSETQGDKLKDVESIRLDISFKSPSHTGLQTTELVKELTEQFPAATPLALVLKKFL
ADRSLDQSYSGGLSSYCLPPHCLLRTLSEGIGDLAYLLISVILITRFLQHEHHLGRSVNQNFGGLLMDFLYFFGNVFDPRQMRISVQGSGVYMTRERGQS
IDPIHIDDPFFPTNNVGRNCFRMVKILLPRFRWSSRAPKPELAVCSIVVDKLIRLGFLQFPAFYPRSCLPFPAPLVRNRGHIISGHLLYHIHWLDVSIYT
TYTISSPSLASVRGCGAKHNSSGDNNGSNSLELVVKDSPRSIIRSSGHVILHITDPLTLEATAFSQTLDFTSRWHQGPTPIHSESTEVDNPAANSRTVWE
AHKALYYPDPLRRPTPLFRYLFLPSSTTNPLSRSRILTHSPIGSQSQKMSSDGLLTIEPQDLQFPFELKKQISSSLQLSNKTDNYVAFKVKTTNPKKYCV
RPNTGVVQPRSACDVIVTMQAQKEAPVDMLQCKDKFLLQSVVTSPGATAKDVSAEMFNKEAGHHVEESKLRVVYVAPPRPPSPVREGSEEGEEPIASLSD
NGGVHPVEHTSVSKPELGRRVEPRDNSLEARALISKLTDEKDSVIKQNKLLQRELEQLRNQTSRNRMGIPITYVVIVALLGIFLGYLLKRA
|
DESeq2's median of ratios [FLAX]
Coexpressed genes
Lus10009279 coexpression network
*The number of genes in the network is adjusted within 50 genes.*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.