Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73440 113 / 1e-29 calmodulin-related (.1) AT4G00140 40 / 0.0007 EDA34 embryo sac development arrest 34, Calcium-binding EF-hand family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015884 [exp] 308 / 5e-105 AT1G73440 129 / 1e-35 calmodulin-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G060700 [exp] 130 / 8e-36 AT1G73440 153 / 2e-45 calmodulin-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009280 pacid=23141876 polypeptide=Lus10009280 locus=Lus10009280.g ID=Lus10009280.BGIv1.0 annot-version=v1.0 ATGGCGCAACGGGAACCCTCGGACTCGGAGTCGGAAGAATCGAAATCAAACGAAGCAAGTTCAGGAGAAGAAGAGCAAGAAGAAAAGGTGGGCAATCGTG GCGGAAATTATGAAGAAAAGGAGGAGTCGGCGGTAATGCCGGATTACGAGAGGCAGAGGCTTGAAATGATGGCTGAAAATAGAGCGAGAATGGAGGCATT AGGTCTTCACACAATGGCATCTTCTCTGATATCCCCGGCGGCAAGGCGACCGGGTCATTCCGAGAAGTCGGCTCGGCGGAAGGGGAAACGCAAATCAGTC GACGATGAGGATTATGAGCCTGACCAGGATGAAGGCGCCGCTGATGATGACGACGACCAAGTTCAAGACTCCGATGATGATTTCCTCGCTCGCCGTTCCT CTTCTAAGCCACCAAAAGACAAGAATAACAAAGGATCAATATCCAGGAAGGGAGTTGCTAGTAAGAAGAAGTCCGTTAAAGTTGCAAATTTTAATGAAGA TGAGGAGTTGATGCAGGCAATAGAGCTCTCCCTTAAAGATTCTCTGCCTCCTAGAGACAAAAAGGCTGCTGCGGGGATGCACGGAACTAATGGGAAGACC AAGAACCAAAAACAGTTCAGTAGCAGAGTGAAGATGACGGAGGACGACCTGATAATGCACTTCTTTCAGTTTGATGAAGTGTTGAAACCATTTAATGAAA CGATGGAGATGGGTGGGAATGTAGAAAGAGGAAGTGGTGTGATTACAAGAAACGATCTGCAGAGAATTGCAACTCAACATGATTTCACATGGTCCGACAA GGAATTGAGCGATATGCTGGATTGCTTTGATGACGATGGAGATGGAAAGTTAAACTTGGCCGACTTCCGCAAGGTGGTCAAGAGATGCAACATGTTACGA GAGTCTGAATGA
AA sequence Show only first row Show all	>Lus10009280 pacid=23141876 polypeptide=Lus10009280 locus=Lus10009280.g ID=Lus10009280.BGIv1.0 annot-version=v1.0 MAQREPSDSESEESKSNEASSGEEEQEEKVGNRGGNYEEKEESAVMPDYERQRLEMMAENRARMEALGLHTMASSLISPAARRPGHSEKSARRKGKRKSV DDEDYEPDQDEGAADDDDDQVQDSDDDFLARRSSSKPPKDKNNKGSISRKGVASKKKSVKVANFNEDEELMQAIELSLKDSLPPRDKKAAAGMHGTNGKT KNQKQFSSRVKMTEDDLIMHFFQFDEVLKPFNETMEMGGNVERGSGVITRNDLQRIATQHDFTWSDKELSDMLDCFDDDGDGKLNLADFRKVVKRCNMLR ESE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73440			calmodulin-related (.1)		Lus10009280 [exp]	0	1
					Lus10005647 [exp]	8.8	0.6751
AT4G11600		LSC803, PHGPX, ...	glutathione peroxidase 6 (.1)		Lus10000603 [exp]	14.0	0.6917
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10012959 [exp]	20.9	0.6808
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Lus10001594 [exp]	24.7	0.6836
AT1G13340			Regulator of Vps4 activity in ...		Lus10041468 [exp]	30.2	0.6681
AT2G40920			F-box and associated interacti...		Lus10001579 [exp]	30.2	0.6467
AT5G42440			Protein kinase superfamily pro...		Lus10001120 [exp]	32.1	0.6800
AT5G19090			Heavy metal transport/detoxifi...		Lus10004465 [exp]	33.8	0.6159
AT4G33300		ADR1-L1	ADR1-like 1 (.1.2)		Lus10021769 [exp]	38.5	0.6547
AT4G15720			Tetratricopeptide repeat (TPR)...		Lus10037505 [exp]	45.6	0.6536

Compare expression of checked genes

Lus10009280 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.