Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45150 498 / 4e-176 CDS4 cytidinediphosphate diacylglycerol synthase 4 (.1.2.3) AT3G60620 484 / 5e-171 CDS5 cytidinediphosphate diacylglycerol synthase 5 (.1) AT1G62430 69 / 2e-12 ATCDS1 CDP-diacylglycerol synthase 1 (.1) AT4G22340 64 / 4e-11 CDS2 cytidinediphosphate diacylglycerol synthase 2 (.1.2.3) AT4G26770 64 / 7e-11 Phosphatidate cytidylyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015882 [exp] 693 / 0 AT2G45150 470 / 1e-163 cytidinediphosphate diacylglycerol synthase 4 (.1.2.3) Lus10028636 [exp] 57 / 1e-08 AT4G26770 656 / 0.0 Phosphatidate cytidylyltransferase family protein (.1) Lus10018934 [exp] 57 / 1e-08 AT4G26770 656 / 0.0 Phosphatidate cytidylyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G060100 [exp] 563 / 0 AT2G45150 453 / 2e-158 cytidinediphosphate diacylglycerol synthase 4 (.1.2.3) Potri.004G001200 [exp] 68 / 4e-12 AT4G22340 705 / 0.0 cytidinediphosphate diacylglycerol synthase 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0234 [flax] [poplar] CTPT PF01148 [flax] [poplar] CTP_transf_1 Cytidylyltransferase family
Representative CDS sequence Show only first row Show all	>Lus10009281 pacid=23141867 polypeptide=Lus10009281 locus=Lus10009281.g ID=Lus10009281.BGIv1.0 annot-version=v1.0 ATGTCGATGGCTTTGGTCATGGAAACTGCCCGTTACAGTTTGAGGCCACTCTATTTGACCGAGCCGCCATGCCTCCCAGTATACACAAATGCTCTAACTA TCACCAAACGATTGTCAAGAGTTGACTTTGGAATAGTCTTAAACGGCTCCGAGCCTGTGTTTCCTGTTCTTCGTGGGAATAGGAATTTAGCTAAGCGGCA ATCGGTTACTGCCGCCGTGTCAAGAGCGGAGGCGGTTGACGACGGTAGTCAAGAGGATGTTGACAAAGATCATAACTTGCCTGCCACAGAGGATAATGCT TCAAAGCCTCAGAAAACGGCAAGTCAACTGAAGAAAAGGATTGCTTTTGGACTTGCAATTGGATTTGCTTGCGGAGGCGTGGTTTTGGCTGGAGGATGGG TGTTCACCGTGGCTTTGGCAGCTGCTGTTTTTGTTGGTTCACGGGAGTACTTTGAACTGGTGAGAAGTCGTGGAATTACTGAAGGAATGACTCCACCTCC TCGATATGTGTCTCGGGTTTGCTCTGTCATCTGTGCTCTTATGCCAATCCTCACATTGTATTTTGGTCAGATTGACATCTCCATAACCTTCTCTGCTTTC GTCATCGCCATTGCCTTACTTCTTCAGAGAGGAAATCCTCGTTTTGCACAACTTAGCAGTGCTATGTTTGGGTTATTTTATTGTGGTTATTTGCCTTGTT TCTGGATCAAGCTTCGATGTGGTTTGGCTGCCCCGGCATTGAACACTAAATTAGCGGGAGCCTGGCCTGTTTTGCTTGGTGGGAATGCTCATTGGACTGT TGGACTTGTTGCAACCTTGATTTCGATGAGTAGCATCATTGCTGCAGATACATATGCTTTTATGGGAGGCAAGGCATTTGGCAAGACACCCTTGACAAGT ATTAGTCCAAAGAAGACTTGGGAAGGAACTCTGTGGGGCTTAGGAGGTTGCATCGTAACATCTATTGTTCTTTCAAAAATATTTTCATGGCCTACATCTG TACTGAGCTCTATCGCATTTGGCGTCCTGAATTTCGTCGGGTCTGTATTTGGCGATCTTACAGAATCAATGATCAAGCGCGATGCGGGTGTCAAGGACTC TGGCTCTCTAATACCAGGGCACGGTGGGATTCTGGACAGAGTAGATAGTTACATCTTCACAGGCGCACTAGCCTACTCATTTGTCAAAATTGTCCTACGG CTATATGGAGTCTGA
AA sequence Show only first row Show all	>Lus10009281 pacid=23141867 polypeptide=Lus10009281 locus=Lus10009281.g ID=Lus10009281.BGIv1.0 annot-version=v1.0 MSMALVMETARYSLRPLYLTEPPCLPVYTNALTITKRLSRVDFGIVLNGSEPVFPVLRGNRNLAKRQSVTAAVSRAEAVDDGSQEDVDKDHNLPATEDNA SKPQKTASQLKKRIAFGLAIGFACGGVVLAGGWVFTVALAAAVFVGSREYFELVRSRGITEGMTPPPRYVSRVCSVICALMPILTLYFGQIDISITFSAF VIAIALLLQRGNPRFAQLSSAMFGLFYCGYLPCFWIKLRCGLAAPALNTKLAGAWPVLLGGNAHWTVGLVATLISMSSIIAADTYAFMGGKAFGKTPLTS ISPKKTWEGTLWGLGGCIVTSIVLSKIFSWPTSVLSSIAFGVLNFVGSVFGDLTESMIKRDAGVKDSGSLIPGHGGILDRVDSYIFTGALAYSFVKIVLR LYGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45150		CDS4	cytidinediphosphate diacylglyc...		Lus10009281 [exp]	0	1
AT1G09795		HISN1B, ATATP-P...	ATP phosphoribosyl transferase...		Lus10003685 [exp]	4.8	0.7869
AT5G52520		PRORS1, OVA6	PROLYL-TRNA SYNTHETASE 1, OVUL...		Lus10027506 [exp]	12.0	0.7507
AT4G33480			unknown protein		Lus10002086 [exp]	12.4	0.7104
AT4G18390	TCP	TCP2	TEOSINTE BRANCHED 1, cycloidea...		Lus10023297 [exp]	13.4	0.7402
AT1G70610		ABCB26, ATTAP1	ATP-binding cassette B26, tran...		Lus10036857 [exp]	20.1	0.7172
AT3G46100		ATHRS1	Histidyl-tRNA synthetase 1 (.1...		Lus10014422 [exp]	22.0	0.6866
					Lus10040651 [exp]	37.0	0.6649
AT2G22600			RNA-binding KH domain-containi...		Lus10002662 [exp]	40.0	0.6945
AT4G34770			SAUR-like auxin-responsive pro...		Lus10042376 [exp]	43.2	0.6755
AT4G37920			unknown protein		Lus10029560 [exp]	43.7	0.7005

Compare expression of checked genes

Lus10009281 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.