Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60670 249 / 1e-83 PLATZ transcription factor family protein (.1) AT2G12646 197 / 7e-63 PLATZ transcription factor family protein (.1) AT1G31040 169 / 6e-52 PLATZ transcription factor family protein (.1) AT1G32700 126 / 9e-36 PLATZ transcription factor family protein (.1.2) AT2G01818 125 / 3e-35 PLATZ transcription factor family protein (.1) AT1G43000 125 / 4e-35 PLATZ transcription factor family protein (.1) AT1G21000 124 / 2e-34 PLATZ transcription factor family protein (.1.2) AT4G17900 123 / 2e-34 PLATZ transcription factor family protein (.1.2) AT1G76590 117 / 4e-32 PLATZ transcription factor family protein (.1) AT5G46710 100 / 1e-25 PLATZ transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015881 [exp] 467 / 3e-169 AT3G60670 251 / 4e-84 PLATZ transcription factor family protein (.1) Lus10008814 [exp] 183 / 3e-57 AT2G12646 301 / 4e-103 PLATZ transcription factor family protein (.1) Lus10008031 [exp] 182 / 5e-57 AT2G12646 294 / 1e-100 PLATZ transcription factor family protein (.1) Lus10039989 [exp] 180 / 2e-55 AT2G12646 292 / 3e-99 PLATZ transcription factor family protein (.1) Lus10038103 [exp] 177 / 1e-54 AT2G12646 289 / 1e-98 PLATZ transcription factor family protein (.1) Lus10036226 [exp] 148 / 2e-44 AT1G31040 191 / 3e-61 PLATZ transcription factor family protein (.1) Lus10000482 [exp] 132 / 1e-37 AT4G17900 284 / 2e-97 PLATZ transcription factor family protein (.1.2) Lus10040082 [exp] 131 / 2e-37 AT4G17900 306 / 2e-106 PLATZ transcription factor family protein (.1.2) Lus10030968 [exp] 130 / 4e-37 AT4G17900 299 / 1e-103 PLATZ transcription factor family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G059300 [exp] 286 / 5e-98 AT3G60670 238 / 6e-79 PLATZ transcription factor family protein (.1) Potri.002G144900 [exp] 280 / 1e-95 AT3G60670 250 / 7e-84 PLATZ transcription factor family protein (.1) Potri.006G060500 [exp] 208 / 2e-67 AT2G12646 321 / 1e-111 PLATZ transcription factor family protein (.1) Potri.018G116000 [exp] 207 / 4e-67 AT2G12646 318 / 2e-110 PLATZ transcription factor family protein (.1) Potri.001G159200 [exp] 191 / 8e-61 AT1G31040 294 / 3e-101 PLATZ transcription factor family protein (.1) Potri.003G075600 [exp] 181 / 2e-56 AT1G31040 306 / 1e-105 PLATZ transcription factor family protein (.1) Potri.008G137300 [exp] 137 / 6e-40 AT2G01818 221 / 5e-73 PLATZ transcription factor family protein (.1) Potri.010G103500 [exp] 133 / 1e-37 AT2G01818 217 / 1e-70 PLATZ transcription factor family protein (.1) Potri.003G092800 [exp] 131 / 1e-37 AT4G17900 290 / 5e-100 PLATZ transcription factor family protein (.1.2) Potri.006G119400 [exp] 130 / 2e-37 AT2G27930 212 / 3e-70 PLATZ transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04640 [flax] [poplar] PLATZ PLATZ transcription factor
Representative CDS sequence Show only first row Show all	>Lus10009283 pacid=23141869 polypeptide=Lus10009283 locus=Lus10009283.g ID=Lus10009283.BGIv1.0 annot-version=v1.0 ATGGACTTGGAATCCAGCAATGGGATGATGTTGCCGCCATGGCTGCAAGTCCTGCTGACGGATAAATTCTTCAACGCTTGCTTAATTCACGAGGATTCCA GGAAGAACGAGAAGAACATTTACTGCGTTGATTGTTGCATCAGCATTTGCTCTCACTGTCTCCCCCCTCACAACTCTCACCGCCTCCTCCAGATTAGGAG GTATGTGTATCATGACGTGTTAAGGCTGGCCGATGGTCACAAGCTATTCGACTGTTCTTTTGTCCAATCCTACAAGACGAACAACGCGAAAGTGGTGTTT CTGAAACCCCGGCCACAGGCGAGGCAATTCAAAGGCTCCGGTAGTTACTGCGGCACCTGCGACCGGACCCTCCAGGAGCCTTATCTCTTCTGCTCCATCT TTTGCAAGATTGAGCACATTTTAGCCACCCAAGGGTTGGGGGGTCTGACGGATTTCATCCACGACTGCGAGTTCTTAACTTTGCCTGAACCCTGCTCCGA CGACGGACGTACGTCGTCGGGGGAACCTAATAACGGCGGTAGCACAAGCAGTAGCGTGGCTATAATGGCGAGCACAGCAGGGACGATGACGGAGGATGTG GTGAGGAAGAAGCGGAGCAGCTTGTCGTCGGCTTTCAGGCCGATTGTATTTCCGCGTATGTCGGAGGAGATGACGGCGGCCAATTTGATGATGAACCGGC GGAAGAAGGCTCCGAGCCGGGCGCCACTTTATTGA
AA sequence Show only first row Show all	>Lus10009283 pacid=23141869 polypeptide=Lus10009283 locus=Lus10009283.g ID=Lus10009283.BGIv1.0 annot-version=v1.0 MDLESSNGMMLPPWLQVLLTDKFFNACLIHEDSRKNEKNIYCVDCCISICSHCLPPHNSHRLLQIRRYVYHDVLRLADGHKLFDCSFVQSYKTNNAKVVF LKPRPQARQFKGSGSYCGTCDRTLQEPYLFCSIFCKIEHILATQGLGGLTDFIHDCEFLTLPEPCSDDGRTSSGEPNNGGSTSSSVAIMASTAGTMTEDV VRKKRSSLSSAFRPIVFPRMSEEMTAANLMMNRRKKAPSRAPLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60670			PLATZ transcription factor fam...		Lus10009283 [exp]	0	1
AT1G04150			C2 calcium/lipid-binding plant...		Lus10011271 [exp]	2.4	0.9534
AT3G19500	bHLH	bHLH113	basic helix-loop-helix (bHLH) ...		Lus10013874 [exp]	6.7	0.9619
AT3G07170			Sterile alpha motif (SAM) doma...		Lus10022780 [exp]	6.8	0.9147
AT3G48710			DEK domain-containing chromati...		Lus10025759 [exp]	8.1	0.9250
AT3G50620			P-loop containing nucleoside t...		Lus10009348 [exp]	12.8	0.8861
AT3G19500	bHLH	bHLH113	basic helix-loop-helix (bHLH) ...		Lus10026589 [exp]	14.8	0.9575
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10014528 [exp]	17.2	0.9513
AT3G60670			PLATZ transcription factor fam...		Lus10015881 [exp]	18.3	0.9436
AT5G63090	AS2	LOBB, LOB	Lateral organ boundaries (LOB)...		Lus10011906 [exp]	19.9	0.9440
AT3G50410	DOF	OBP1, AtDof3. 4	OBF binding protein 1 (.1)		Lus10019646 [exp]	20.7	0.8645

Compare expression of checked genes

Lus10009283 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.