Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60680 508 / 1e-177 Plant protein of unknown function (DUF641) (.1) AT2G45260 265 / 7e-84 Plant protein of unknown function (DUF641) (.1) AT1G53380 206 / 9e-61 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) AT3G14870 200 / 2e-58 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) AT1G29300 180 / 6e-51 UNE1 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) AT4G34080 153 / 8e-43 Plant protein of unknown function (DUF641) (.1) AT5G58960 149 / 3e-39 GIL1 GRAVITROPIC IN THE LIGHT, Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) AT4G33320 141 / 3e-38 Plant protein of unknown function (DUF641) (.1) AT2G30380 115 / 2e-27 Plant protein of unknown function (DUF641) (.1) AT4G36100 72 / 6e-14 Sec1/munc18-like (SM) proteins superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001989 [exp] 257 / 2e-80 AT2G45260 671 / 0.0 Plant protein of unknown function (DUF641) (.1) Lus10030291 [exp] 255 / 6e-80 AT2G45260 668 / 0.0 Plant protein of unknown function (DUF641) (.1) Lus10007312 [exp] 208 / 2e-61 AT1G29300 433 / 2e-149 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Lus10029259 [exp] 203 / 1e-59 AT1G29300 419 / 6e-144 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Lus10009923 [exp] 198 / 6e-58 AT2G45260 275 / 2e-88 Plant protein of unknown function (DUF641) (.1) Lus10024190 [exp] 195 / 1e-56 AT2G45260 270 / 1e-86 Plant protein of unknown function (DUF641) (.1) Lus10005424 [exp] 192 / 9e-56 AT1G29300 365 / 3e-123 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Lus10015232 [exp] 189 / 1e-54 AT1G29300 377 / 7e-128 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Lus10008587 [exp] 185 / 7e-53 AT2G45260 266 / 1e-84 Plant protein of unknown function (DUF641) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G145000 [exp] 566 / 0 AT3G60680 494 / 4e-172 Plant protein of unknown function (DUF641) (.1) Potri.014G066600 [exp] 548 / 0 AT3G60680 522 / 0.0 Plant protein of unknown function (DUF641) (.1) Potri.002G145900 [exp] 255 / 9e-80 AT2G45260 692 / 0.0 Plant protein of unknown function (DUF641) (.1) Potri.011G108000 [exp] 233 / 8e-71 AT1G53380 531 / 0.0 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Potri.001G387700 [exp] 223 / 3e-67 AT1G53380 524 / 0.0 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Potri.011G071000 [exp] 198 / 6e-58 AT1G29300 483 / 3e-169 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Potri.004G061600 [exp] 194 / 2e-56 AT1G29300 485 / 6e-170 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Potri.013G155400 [exp] 191 / 4e-55 AT2G45260 300 / 4e-98 Plant protein of unknown function (DUF641) (.1) Potri.014G067600 [exp] 156 / 2e-43 AT2G45260 462 / 3e-163 Plant protein of unknown function (DUF641) (.1) Potri.019G128300 [exp] 155 / 3e-42 AT2G45260 241 / 2e-75 Plant protein of unknown function (DUF641) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04859 [flax] [poplar] DUF641 Plant protein of unknown function (DUF641)
Representative CDS sequence Show only first row Show all	>Lus10009284 pacid=23141877 polypeptide=Lus10009284 locus=Lus10009284.g ID=Lus10009284.BGIv1.0 annot-version=v1.0 ATGGACGCCGTCGGTGGCGCCACCGCTTCTTCCAACCAGAAGCCCCCGCAAATCTCCGATATGTTCCAGAAATTCGCCCTGGCTTTCAAGGCCAAGACAT TCGACTTCTTCGCCGAAGAAGAAGAAGAAGACGCCGCCTCCGCCGCCGATGACGACGGTTTCACTCTCTTCAACTCCGCCGAGGACTTCATTCCCGATCA GAAGGTTATTATCCTCAAGCCAGACCGCCCGGCTGTAGCAGAAGAGGAGACTAGTCCCTCCGCCGCCGCCAAGCCGAATTCAATTCTCCCGACCCGGATC CGACGACCCGTGGACGCCCGCCTGTCGCATTCGCTCATTTCTTCGATATTCGCTACGGTTTCTTCTTTCGAAGCTTCGTATCTGCAGCTGCAGACTGCTC ACGTGCCGTTTAGCGAGCAAGGGATAAAGACTGCCGACGAGGCAATTGTGTCCAATCTTCAGCGGCTGTCTGATTTCAAGCAGTTTTACAGGGGTTTGTG TGGGAATTTGGATGAGGTTGCCTCTGGTTTGCCGATTGGTTCGTGTTTGGAAGCTCAGGTGCAAGAGAATCAGAACAAGCTCAGAGTTCTTGGGACTGTT TCTGACCGATTGCAGGGTGAAATCGACCGTAAGGATAGTGAAGTTTCAGCAATGAGGATGAACCTTGCGGATTTGCACAAGTCGAATGTCCTTTTGTCGA AGAGGTTAGCTGGGAACTTGAATTTGAATGCATCTGCTGATGTGCTGTTGTCTGTTCGTGTTTTTGAGTCCCTGTTGAATGATACTCATAGAGCAATCCA TCAATTTACCAAAATTCTGATCGATTTAATGAGAAAGGCTGATTGGGATTTGGATTTGGCTGCCAATTCAGTTCATCCCTGCGTCCAATATGCAAAAGGA GGTCACTATGGGTATGCATTTCTTTCCTATGTAAGCATAGGGATGTTTCGAGGTTTCGATTCGAAGAATTTCGATTTGGGAGATGACGAGGCAGAGAATT TGTGTAATGAGCATGGATCGGATTCAGTAAAGGTGAATCCTTCCTTGAAGAAGTTACTCCAGCATGTTTCTGGCAGTGCTATGGAGATGCTAAGTAGGAA TGCATCCAGCCAATTCTCGAGATTCTGCGAGAAGAAGTATCAAGAGCTTATACACCCAACGATGGAGTCCTCGATTTTCCGCAACTTGGATCCGAATGAT GCAGTGGTGAGCTCGTGGCGGTCACTAAGCATGTTCTACGAATCTTTTGTTAACATGGCTAGCTCGGTCTGGACGCTTCATATGCTGGCATTTTCGTTTG ATCCTGCTGTTGAGATATTCCAAGTGGAGAAAGGGGTCGATTTCTCCATTGTGTTTATGGAAGATGTAACCAGAAAGTTCACTTTGCCTACAAAAACTAG AGTAAAGGTTGGGTTCACAGTGTTTCCAGGGTTTAAGGTTGGAAGAACAGTTATTCAGTCCCTGGTCTACTTGAATCGCTTGAAATCTACAGAGTAG
AA sequence Show only first row Show all	>Lus10009284 pacid=23141877 polypeptide=Lus10009284 locus=Lus10009284.g ID=Lus10009284.BGIv1.0 annot-version=v1.0 MDAVGGATASSNQKPPQISDMFQKFALAFKAKTFDFFAEEEEEDAASAADDDGFTLFNSAEDFIPDQKVIILKPDRPAVAEEETSPSAAAKPNSILPTRI RRPVDARLSHSLISSIFATVSSFEASYLQLQTAHVPFSEQGIKTADEAIVSNLQRLSDFKQFYRGLCGNLDEVASGLPIGSCLEAQVQENQNKLRVLGTV SDRLQGEIDRKDSEVSAMRMNLADLHKSNVLLSKRLAGNLNLNASADVLLSVRVFESLLNDTHRAIHQFTKILIDLMRKADWDLDLAANSVHPCVQYAKG GHYGYAFLSYVSIGMFRGFDSKNFDLGDDEAENLCNEHGSDSVKVNPSLKKLLQHVSGSAMEMLSRNASSQFSRFCEKKYQELIHPTMESSIFRNLDPND AVVSSWRSLSMFYESFVNMASSVWTLHMLAFSFDPAVEIFQVEKGVDFSIVFMEDVTRKFTLPTKTRVKVGFTVFPGFKVGRTVIQSLVYLNRLKSTE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60680			Plant protein of unknown funct...		Lus10009284 [exp]	0	1
AT5G47750		PK5, D6PKL2	D6 protein kinase like 2 (.1)		Lus10039105 [exp]	11.7	0.7227
AT4G35870			early-responsive to dehydratio...		Lus10028409 [exp]	22.6	0.6868
AT3G13980			unknown protein		Lus10037659 [exp]	27.8	0.6760
AT5G40400			Pentatricopeptide repeat (PPR)...		Lus10013077 [exp]	37.3	0.6177
AT4G28980		CAK1AT, CDKF;1	CYCLIN-DEPENDENT KINASE F;1, C...		Lus10023659 [exp]	39.7	0.6549
AT5G52882			P-loop containing nucleoside t...		Lus10027551 [exp]	45.4	0.6522
AT3G22440			FRIGIDA-like protein (.1)		Lus10006113 [exp]	56.3	0.6503
					Lus10035796 [exp]	114.5	0.5965
AT4G00650		FLA, FRI	FLOWERING LOCUS A, FRIGIDA-lik...		Lus10043012 [exp]	238.6	0.5354
AT1G47056		VFB1	VIER F-box proteine 1 (.1)		Lus10024798 [exp]	292.5	0.5179

Compare expression of checked genes

Lus10009284 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.