Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45200 415 / 3e-149 ATGOS12, GOS12 golgi snare 12 (.1.2) AT1G15880 118 / 1e-32 ATGOS11, GOS11 golgi snare 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001986 [exp] 423 / 2e-152 AT2G45200 437 / 5e-158 golgi snare 12 (.1.2) Lus10030294 [exp] 295 / 2e-101 AT2G45200 297 / 2e-102 golgi snare 12 (.1.2) Lus10015880 [exp] 128 / 7e-38 AT2G45200 151 / 3e-47 golgi snare 12 (.1.2) Lus10026058 [exp] 108 / 7e-29 AT1G15880 288 / 4e-100 golgi snare 11 (.1) Lus10014349 [exp] 91 / 5e-23 AT1G15880 214 / 7e-72 golgi snare 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G066800 [exp] 404 / 1e-144 AT2G45200 372 / 3e-132 golgi snare 12 (.1.2) Potri.002G145200 [exp] 374 / 1e-132 AT2G45200 365 / 3e-129 golgi snare 12 (.1.2) Potri.001G047100 [exp] 125 / 4e-35 AT1G15880 369 / 2e-131 golgi snare 11 (.1) Potri.003G180800 [exp] 123 / 2e-34 AT1G15880 365 / 4e-130 golgi snare 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0147 [flax] [poplar] Traffic PF12352 [flax] [poplar] V-SNARE_C Snare region anchored in the vesicle membrane C-terminus
Representative CDS sequence Show only first row Show all	>Lus10009285 pacid=23141863 polypeptide=Lus10009285 locus=Lus10009285.g ID=Lus10009285.BGIv1.0 annot-version=v1.0 ATGACGGATCCAAGTTTGGAACTGCAGGAATCAGGCTGGGAGGAGCTCCGGCGAGAGGCTCGCAAGGTGGAAGGAGATCTCGACGTCAAGCTCTCTTCTT ATGCTAAGCTCGGTGCCCGCTTCACCCAAGCAGGTTATGTTGAGACTGGATCACCAACTGTTACATCTGGTAGATCATGGAAGTCTATGGAAATGGAAAT CCAGTCGCTGCTGGAGAAGCTATTAGATATTAACGACTCTATGAGTAGGTGTGCAGCGTCTGCTTCACAAACTACTTCAGTGACTCAAAAGCTTGCAAGA CATAGAGACATACTCCATGAGTTTACTCAGGAATTCAGACGGATAAAGGGAAACATCAACTCAATGAAGGAGCACGCTGAATTACTTAGTTCAGTCAGAG ATGATATCAGCGAGTATAAGGCTTCAGGAAGCATGTCTCCAAGAATGCAATTGTTACGTGAAAGAGCTTCCATACATGGAAGCATTTCTCATATAGATGA TGTGATTAGTCAAGCTCAGGCAACCAGAGTAGTATTGGGGTCTCAAAGGTCGTTCTTTGGAGATGTTCAAGGGAAAGTGAAACATCTAGGCGACAAGTTC CCGGTCATACGTGGTTTACTCGGTTCTATCAGGAGGCGGCGTTCTAGAGACACTCTTATACTCTCTGCCGTCATTTCAGCTTGTTCGTTGTTCCTAATCA TTTATTGGCTGTCCAAATGA
AA sequence Show only first row Show all	>Lus10009285 pacid=23141863 polypeptide=Lus10009285 locus=Lus10009285.g ID=Lus10009285.BGIv1.0 annot-version=v1.0 MTDPSLELQESGWEELRREARKVEGDLDVKLSSYAKLGARFTQAGYVETGSPTVTSGRSWKSMEMEIQSLLEKLLDINDSMSRCAASASQTTSVTQKLAR HRDILHEFTQEFRRIKGNINSMKEHAELLSSVRDDISEYKASGSMSPRMQLLRERASIHGSISHIDDVISQAQATRVVLGSQRSFFGDVQGKVKHLGDKF PVIRGLLGSIRRRRSRDTLILSAVISACSLFLIIYWLSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45200		ATGOS12, GOS12	golgi snare 12 (.1.2)		Lus10009285 [exp]	0	1
AT5G06830			unknown protein		Lus10016277 [exp]	3.2	0.9070
AT1G13750			Purple acid phosphatases super...		Lus10036902 [exp]	4.7	0.8839
AT5G53530		VPS26A	vacuolar protein sorting 26A (...		Lus10037421 [exp]	8.8	0.8791
AT4G13530			unknown protein		Lus10003531 [exp]	13.7	0.8473
AT4G21220		AtLpxD2	lipid X D2, Trimeric LpxA-like...		Lus10020067 [exp]	16.0	0.8394
AT2G23940			Protein of unknown function (D...		Lus10028450 [exp]	16.1	0.8511
AT1G35190			2-oxoglutarate (2OG) and Fe(II...		Lus10011126 [exp]	17.5	0.8665
AT1G09920			TRAF-type zinc finger-related ...		Lus10028213 [exp]	18.4	0.8448
AT3G05580		TOPP9	type one protein phosphatase 9...		Lus10031489 [exp]	19.9	0.8586
AT4G20330			Transcription initiation facto...		Lus10029563 [exp]	20.7	0.8460

Compare expression of checked genes

Lus10009285 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.