Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60730 317 / 4e-106 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G23200 254 / 2e-81 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G11580 243 / 3e-77 ATPMEPCRA methylesterase PCR A (.1) AT5G51490 243 / 3e-77 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G51500 240 / 4e-76 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G45220 237 / 2e-75 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G02330 238 / 5e-75 AtPME41, ATPMEPCRB pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G47550 236 / 1e-74 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G02810 236 / 3e-74 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G10720 236 / 5e-74 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015877 [exp] 441 / 2e-155 AT3G60730 535 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10009110 [exp] 254 / 1e-81 AT1G23200 501 / 1e-173 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10013344 [exp] 249 / 1e-79 AT3G14310 698 / 0.0 pectin methylesterase 3 (.1) Lus10006103 [exp] 244 / 2e-78 AT2G45220 592 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10039314 [exp] 246 / 4e-78 AT3G14310 702 / 0.0 pectin methylesterase 3 (.1) Lus10038917 [exp] 244 / 8e-78 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027202 [exp] 236 / 2e-74 AT2G45220 620 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10008203 [exp] 234 / 6e-74 AT4G02320 497 / 2e-172 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027206 [exp] 233 / 6e-74 AT2G45220 551 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G145700 [exp] 281 / 5e-94 AT3G60730 447 / 3e-155 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G109400 [exp] 270 / 1e-87 AT1G23200 579 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G126800 [exp] 263 / 2e-85 AT2G45220 637 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127700 [exp] 262 / 6e-85 AT2G45220 680 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.014G067100 [exp] 249 / 4e-80 AT2G45220 691 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.011G025400 [exp] 246 / 2e-78 AT1G11580 638 / 0.0 methylesterase PCR A (.1) Potri.015G127800 [exp] 245 / 2e-78 AT3G47400 649 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.001G162400 [exp] 244 / 2e-77 AT3G14310 792 / 0.0 pectin methylesterase 3 (.1) Potri.003G072800 [exp] 243 / 5e-77 AT3G14310 795 / 0.0 pectin methylesterase 3 (.1) Potri.002G145500 [exp] 241 / 8e-77 AT2G45220 670 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase
Representative CDS sequence Show only first row Show all	>Lus10009287 pacid=23141900 polypeptide=Lus10009287 locus=Lus10009287.g ID=Lus10009287.BGIv1.0 annot-version=v1.0 ATGGCACCTCAAGCTAACATCAGTAGTAATGTGGGACTCCTAATGTCATGGACATCCGCAACCTCCAAGGCCAACTTCGTAGTTGCCAAAGACGGTTCCG GCACACACAGATCCGTAAACGACGCCGTGGAGGCAGCAGCATCAGGAAGAAGAACCTCAGCGGAGAGAGTGGTTATACACGTGAAAGCGGGAGTTTACAA TGAGAGAGTAGAGATCCCTCTCCACTTGAAGAATCTCATGTTGGTCGGCGACGACATTGATCGAACTGTCATCACCGGTAGCCGGAATATCCCCGATGGC TCCACCACCTATAACTCCGCCACCTTCGGTAATTTGTGTTTCGGGAGACCGCTTTTGGGCGAGGGACATCACGTCGAGAACACTGCCGCCCCACAGAAGC ACCAGGCGGTAGCGCTCCGAGTGAACTCCGATCAGGCGTTTTTCTACCGATGTAGCTTCAGAGGATATCATGACACTCTGTTCGTACATTCCCTCCGCCA ATTCTACGGCGACTGCCATATCTACGGCACAATCGATTTCATCTTCGGGGACGCCTCCGCCGTTCTGCAGAACTGCGACATTTTCGCGAGGAAGCCGCTT CGGGGCCAGGCGAATTTCATCACCGCTCAGGGACGAGAAGATGCGAATCAGAACACCGGCATTTCGATCCAGGGGTCCAGAGTCCGACCTGCAACTGATT TTGCCGGTTCTTCTTCAATTCGGAGTTATTTGGGGAGGCCGTGGAAGGAGTACTAG
AA sequence Show only first row Show all	>Lus10009287 pacid=23141900 polypeptide=Lus10009287 locus=Lus10009287.g ID=Lus10009287.BGIv1.0 annot-version=v1.0 MAPQANISSNVGLLMSWTSATSKANFVVAKDGSGTHRSVNDAVEAAASGRRTSAERVVIHVKAGVYNERVEIPLHLKNLMLVGDDIDRTVITGSRNIPDG STTYNSATFGNLCFGRPLLGEGHHVENTAAPQKHQAVALRVNSDQAFFYRCSFRGYHDTLFVHSLRQFYGDCHIYGTIDFIFGDASAVLQNCDIFARKPL RGQANFITAQGREDANQNTGISIQGSRVRPATDFAGSSSIRSYLGRPWKEY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60730			Plant invertase/pectin methyle...		Lus10009287 [exp]	0	1
AT1G57790			F-box family protein (.1)		Lus10019204 [exp]	1.0	0.9552
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Lus10005050 [exp]	4.9	0.8150
AT3G54700		PHT1;7	phosphate transporter 1;7 (.1)		Lus10022934 [exp]	7.7	0.8044
AT1G48020		ATPMEI1	ARABIDOPSIS THALIANA PECTIN ME...		Lus10001658 [exp]	8.9	0.8044
AT1G01280		CYP703A2	"cytochrome P450, family 703, ...		Lus10010119 [exp]	10.0	0.8044
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10027892 [exp]	11.0	0.8044
AT5G39130			RmlC-like cupins superfamily p...		Lus10015129 [exp]	11.8	0.8044
AT5G01180		ATPTR5	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10017177 [exp]	12.6	0.8044
					Lus10017294 [exp]	13.4	0.8044
AT4G04960			Concanavalin A-like lectin pro...		Lus10039837 [exp]	14.1	0.8044

Compare expression of checked genes

Lus10009287 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.